| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0835 |
|---|
| Symbol | |
|---|
| ID | 4201378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 988652 |
|---|
| End bp | 989968 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 638081719 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_695286 |
|---|
| Protein GI | 110798965 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA TAGATTTAAC CAAGGGTAAG GTACTAAGTG TCCTTACCAC CTTAGCTCTT
CCTATTATGG GAAGTTCATT CCTTCAGTTT GCTTATGGGC TTATAGATAT GTTTTGGGTT
GGAGGTCTTG GAAGTAGTGC AGTGGCTAGT ATTGGCTCTT CAAGCTTTTT TTTAGGACTA
GGATATTCTA TAAATGCCTT AGTAGTTACG GGAACTGGAA TTAAGGTTTC TCATGAAGTA
GGGAGAAAAA ATGAAATAGA GACAGAGGAT TATATAAGAA ATGGTATTAT AATGAATTTT
CTTATAGGAC TAATATATGC ATTAGTATTA GTGGTTTTTG GAAAAGGATT CATAGGATTT
TTAAATTTAA ATGATCCCTT AGTTGAAAGA GATTCTTATA TATATTTAGC TGTAAGTGCT
CCAGTATTAT TTTTTAGCTT TTTTAATTAT CTTTTTACTA GAATATTAGC TAGCTTTGGT
AATAATAAAT TAGCTTTAAA AATAAGTGCT ACAGGTATAA TTTTAAATAT GATATTAGAT
CCAATATTAA TATATACCTT TAAACTTGGT GTTTTTGGAG CAGCAGTGGC AACCTTACTT
GCCAATATAC TTATGTTTTT TATGTATATA TATTATGGAA AAGGAATATT TAAAATAGAT
TTAAAAAAGA AAATAAACTA TGAAAAAGTA AGAGAAATAG CTAGATTAGG ATTTCCTATG
GCATCTCAAA GGGTACTTTT TACCTTAGTG AATATTATAT TAGCTAGAAT TATAGCTAGC
TTTGGAGCAG ATGCTATAGC AGCTCAGAAA ATAGGGCTTC AAATAGAATC TGTAAGCTTT
ATGGTAATTG GAGGATTAAA CGGGGCTATA GCAGGATTTA CAGGACAAAA TTATGGAGCA
AAGAAACTAA ATAGAGTAAA TGAAGGGTAT AAGAAAGCCT TGCTTTTAGG AGCTATATAC
TCAGTACTTG TTTCAGCCTT ATTTATTTGT ATTCCAGGAT TATTAGTAGG ATTATTTGTT
AAGGATGAGG CTACAATAAT AATTGGAAGC AGTTATTTAA GAGTACTTGG AATAGTTCAG
ATATTTAGTA GTTTTGAGAT GATATCAAAT GGGGTATTCT CAGGATTAGG ACTTCCTAAA
ATACCATCAG CCATAAGTAT AATCTTTACT ATGTTAAGAA TTCCTATGGC CTTAGTTTTA
GTAAAGTTTT TAGGGATAAA TGGAGTTTGG TGGAGCATTG CAATATCAAA CATATTAAAA
GGAAGCACAT CTTGTATAAT TTATAGATTA AAAATTTATA GAAACTATAT TGTGTAA
|
|---|
| Protein sequence | MKKIDLTKGK VLSVLTTLAL PIMGSSFLQF AYGLIDMFWV GGLGSSAVAS IGSSSFFLGL
GYSINALVVT GTGIKVSHEV GRKNEIETED YIRNGIIMNF LIGLIYALVL VVFGKGFIGF
LNLNDPLVER DSYIYLAVSA PVLFFSFFNY LFTRILASFG NNKLALKISA TGIILNMILD
PILIYTFKLG VFGAAVATLL ANILMFFMYI YYGKGIFKID LKKKINYEKV REIARLGFPM
ASQRVLFTLV NIILARIIAS FGADAIAAQK IGLQIESVSF MVIGGLNGAI AGFTGQNYGA
KKLNRVNEGY KKALLLGAIY SVLVSALFIC IPGLLVGLFV KDEATIIIGS SYLRVLGIVQ
IFSSFEMISN GVFSGLGLPK IPSAISIIFT MLRIPMALVL VKFLGINGVW WSIAISNILK
GSTSCIIYRL KIYRNYIV
|
|---|
| |