| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0741 |
|---|
| Symbol | cstA |
|---|
| ID | 4201193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 880647 |
|---|
| End bp | 882098 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638081625 |
|---|
| Product | carbon starvation protein CstA |
|---|
| Protein accession | YP_695192 |
|---|
| Protein GI | 110799709 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.230376 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATCAT TTTTATTATC ATTAGTATTA TTAATTGTGG GCTACTTTAC TTATGGAAAA
TTTGTGGACA AGACCTTTGG TACAAATGAT TCAATTGAAA CACCTGCTGA GTCTATGGCA
GATGGAGTAG ACTATGTACC AATGAGTTGG CCAAGAATTT TTTTAATTCA GTTTCTTAAT
ATTGCTGGGC TTGGACCTAT ATTTGGAGCC ATAGCTGGAG CATTATGGGG ACCTGTAGCA
TTTTTATGGA TAGTTTTTGG ATGTATATTC GCAGGAGCTG TTCATGACTA TTTCACAGGA
GTTTTATCTA TAAGAAATAA AGGGGTATCA GTTGCTGAAC TTGTAGGTAA ATATCTTGGA
GAAATACCAA GAAAAATAAT GGTTATATTT TCTGTAGTAT TATTAATTTT AGTTGGGGTA
GTTTTCTTAA CAGGCCCAGC AGATCTTTTA AAAACTTTAA CAGGAATAGA CAGAGATATA
TTTATAGTTA TTATAGTAGT ATATTATATA GCAGCCACTG TTTTACCAGT AGATAAGGTT
ATAGGAAAAA TTTATCCTAT ATTTGGACTT TGCCTTTTAA TAATGGCTGT AGGAATAGGT
GCTGGAATTG TAATTGAAGG ATATAATATT CCAGAAATTC AATTAGCAAA CTTCCATCCA
GAAGGAACAC CAATATTCCC ATTCTTATTT ATAACAATAG CTTGTGGAGC TATATCTGGA
TTCCATGCTA CACAATCACC TATTATGGCT AGATGTGTAA AAAAAGAATC AGAGGCAAGA
AAAGTATTCT ATGGTGCAAT GATTGCAGAG GGAGTTATAG CCTTGGTTTG GGCAGCGGCA
GCTATGTCCT TCTTTGGTGA TACAAATGGA TTACAAGAAA TTTTAAAAGC TGGAGGACCA
GCCACTGTAG TTAATACTAT TTCTAATACA GTAATGGGAA AAGTAGGTGC CGTATTAGCA
ATATTAGGGG TAGTAGCTTG TCCTATATCT TCAGGCGATA CAGCTTTCAG AAGTGCTAGA
CTTACAATTG CTGATGCTTT TAAACTTAAA CAAGATAAGG TTATTGATAG ATTTAAGATA
GCCATACCAC TATTTGTTGT GGGTATAGCA TTAACTTTTA TTGATTTTGG CATAATATGG
AGATATTTCT CATGGTCAAA TCAAACTTTA GCAATGATAA TGCTTTGGGC AGCATCTGCT
TATATGTTAA AAGCTCATAA TAATTATTGG ATAACCTTAG TGCCAGCAGT TTTCATGTCA
GCAGTTACTT GTTCATATAT ATTACAAGCT CCTGAAGGAT TTAGATTAAA TGCAACATTT
TCTAATATAG CAGGTGTGGT ATTTGCCTTA GTTCTTTTTG GAATTTTCAT TAAGTATTGT
AAAAAAGAAA ATAATGAAAA TTGTGAGATT GTAGAAATTG AGGAAGTAGA AGAGGTGATT
AAAAATAAAT AA
|
|---|
| Protein sequence | MISFLLSLVL LIVGYFTYGK FVDKTFGTND SIETPAESMA DGVDYVPMSW PRIFLIQFLN
IAGLGPIFGA IAGALWGPVA FLWIVFGCIF AGAVHDYFTG VLSIRNKGVS VAELVGKYLG
EIPRKIMVIF SVVLLILVGV VFLTGPADLL KTLTGIDRDI FIVIIVVYYI AATVLPVDKV
IGKIYPIFGL CLLIMAVGIG AGIVIEGYNI PEIQLANFHP EGTPIFPFLF ITIACGAISG
FHATQSPIMA RCVKKESEAR KVFYGAMIAE GVIALVWAAA AMSFFGDTNG LQEILKAGGP
ATVVNTISNT VMGKVGAVLA ILGVVACPIS SGDTAFRSAR LTIADAFKLK QDKVIDRFKI
AIPLFVVGIA LTFIDFGIIW RYFSWSNQTL AMIMLWAASA YMLKAHNNYW ITLVPAVFMS
AVTCSYILQA PEGFRLNATF SNIAGVVFAL VLFGIFIKYC KKENNENCEI VEIEEVEEVI
KNK
|
|---|
| |