| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0652 |
|---|
| Symbol | |
|---|
| ID | 4202913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 781031 |
|---|
| End bp | 782341 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 25% |
|---|
| IMG OID | 638081537 |
|---|
| Product | F5/8 type C domain-containing protein |
|---|
| Protein accession | YP_695105 |
|---|
| Protein GI | 110799173 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3669] Alpha-L-fucosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0313432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAA CTCTAGTAAA CCTAACTCCA ACTAAAGAAC AAAGAAAATA CCAAGAAGAT
GAACTAATAG CTTTTTTAGA CCTCCAAATG AATACATTTA CAGCTAATTC TGAAAATAAT
GATGAGGCTC CTTCTTTATT AAAAAAAGAG ACTTCATTTA ACACAGATAT ATGGATAGAA
AATCTATTTA AATTTGGATT TAAGAAAGTT ATTTTAACTG CTAAGCTTAA TAATGGTATT
TGTTTATGGC AAAGCAATTG TTCAAAGGTT AATATAAATA CTTTTTCTTT AGAGAATAAT
TATGATGATT TAGTAAAAAA AGTTAGTAAA TCTTGTAAAA AGTTTGGACT TAAATTTGGT
ATTCATCTTA CTTTAAAAGA TTATCTCACT TTAAACTTAA CTCCTGAAGA ATATGATAAT
TACTACACGT CTCAATTAAA AGAACTTATG ACTAATTATT CACAAATAAG TGAAGTTATT
ATGGATATGA CCTCTTTAGA TGAATATTAT GACTCCCTTG ATTTTGAAAG ATACTTTAAA
GTAGTTAAAG AAATAAATCC TAAATGTATG ATATCTAGCC CTATTGGACC TGATGTACGT
TGGACATATT ATTCTGATAT AGAGTCATCT AAAAACTATT TCTACTCTTC TATAAATTTA
GATCTTTTAA AAGAAGATTT TAACAACGAA GAGATTAGAA AAGGAAATAT TTATGGAGAC
ACTTGGATTG TTGGAGAAAG TATTTACTCT CTATCTGACT GCTTAAACCA TAATAAAGAT
TCATTATCAA ATTTAAAACA TGTGTATAAT AATTCATTAG GAAGAAATAC AAACTTGGTA
TTAGTTTTAT CTCCTAATAC AGATGGATTA TTAAATCATA ATGAATTAAG TTTACTTTCT
GATTTTTCTA AATATATAAA AGAAACTTTT TCTAATAATC TTATTAAGGG CTCTTCTATA
TTAGCTACAA ATTCATCTTC TAGCGATAGC TATAATTTAA TTGATGACTA CAAAAAATCT
TATTGGATAG CTAATGAAAA TGCTGTTAAC CCTTATATAG AGATAGATTT TAAAACTATC
ACTGAATTTA ATATTTTAGA AATTAGAGAG TGGATTGCTG AAGGTCAAAA CGTAGAAGAA
TTTAAAGTTT ATGCATATAA CAATGGTTGG TTTGAACTTT ATAATGGTAC TTCTATTGGA
TATAGACATA TAGCAAAACT TAATAATATC AAAACTGATA AAATTAAAAT TTCATTTACT
AAATATAAAA ACCCACCTAT GATTAATCAT ATTGGTGCAT ATTTAGGATA A
|
|---|
| Protein sequence | MNTTLVNLTP TKEQRKYQED ELIAFLDLQM NTFTANSENN DEAPSLLKKE TSFNTDIWIE
NLFKFGFKKV ILTAKLNNGI CLWQSNCSKV NINTFSLENN YDDLVKKVSK SCKKFGLKFG
IHLTLKDYLT LNLTPEEYDN YYTSQLKELM TNYSQISEVI MDMTSLDEYY DSLDFERYFK
VVKEINPKCM ISSPIGPDVR WTYYSDIESS KNYFYSSINL DLLKEDFNNE EIRKGNIYGD
TWIVGESIYS LSDCLNHNKD SLSNLKHVYN NSLGRNTNLV LVLSPNTDGL LNHNELSLLS
DFSKYIKETF SNNLIKGSSI LATNSSSSDS YNLIDDYKKS YWIANENAVN PYIEIDFKTI
TEFNILEIRE WIAEGQNVEE FKVYAYNNGW FELYNGTSIG YRHIAKLNNI KTDKIKISFT
KYKNPPMINH IGAYLG
|
|---|
| |