| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0079 |
|---|
| Symbol | |
|---|
| ID | 4202189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 94243 |
|---|
| End bp | 95013 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 638080960 |
|---|
| Product | putative transcriptional regulator IolR |
|---|
| Protein accession | YP_694543 |
|---|
| Protein GI | 110799326 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTCAA AAAGAATAGA CCTAGTAGAA AATTACATTA TTAATCACAA AACCGTATCA
ATTGACAAAC TATGTGAAGT GTTTGATGTA TCAAAAAATA CCATAAGAAG GGATTTAAGT
GTTCTAGTTG AAAAAGGAAC CATAAAAAAA GTCTATGGTG GAGTGACGGT TAATGAAAAT
CAAGAGTTAG TATCTTTTGA AGAAAGAAAT GTTAAAAATA GCAATTCAAA ATTAGCTTTA
GGAAAGGCTG CTGCTGAATT TATTGAAGAT GGATATAGCA TCTTTTTAGA TTCTGGTACA
ACAACAGTTA ATATTATCGA TTTCCTAAAA GATAAAAAAG ATATAACTAT TTTCACTAAT
AGCGTTACAG CTATATGCAA AGGAATTCAC TACAATAACT TAAATATAAT TTGTTTATCA
GGAATTCTTA ACAGAAAAAC TCAATCTTTT ACAGGCTTAC ATAGCACAGA TATATTAAAA
AGTTATAATA TAAATAAATG CTTCATGGCT TGTACTGGTA TTTCACTAAA AAGAGGAGTT
ACTAATTCTA CTAAAGAAGA ATTTAAAATA AAGAAAACTG CAATCTCTAG AAGTGCTGAA
TGTTTCCTTT TAGCTGATCA ATCAAAATTT GATCATGTTT CTTTAATGAC TTTCTGTGAA
ATTAATGATT TAAATTGTGT TATAACAGAT GCAAAACCTA GTGATGAATA TATTGAATAC
TTTAATGATA ATAATGTAGA TTTAAAAATT TGTGAAAAAG TAATTTACTA A
|
|---|
| Protein sequence | MRSKRIDLVE NYIINHKTVS IDKLCEVFDV SKNTIRRDLS VLVEKGTIKK VYGGVTVNEN
QELVSFEERN VKNSNSKLAL GKAAAEFIED GYSIFLDSGT TTVNIIDFLK DKKDITIFTN
SVTAICKGIH YNNLNIICLS GILNRKTQSF TGLHSTDILK SYNINKCFMA CTGISLKRGV
TNSTKEEFKI KKTAISRSAE CFLLADQSKF DHVSLMTFCE INDLNCVITD AKPSDEYIEY
FNDNNVDLKI CEKVIY
|
|---|
| |