| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3766 |
|---|
| Symbol | rluC |
|---|
| ID | 4183789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 4355862 |
|---|
| End bp | 4356533 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638073753 |
|---|
| Product | ribosomal pseudouridine synthase C, large subunit |
|---|
| Protein accession | YP_680342 |
|---|
| Protein GI | 110640132 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.695694 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAATTA TAATCCAAGT TCCGGACCAT ATTTTGTATG AAGACAATTA CATCCTTGTA
GTGAACAAGC CCTGCAGTTT AATGGTAGAG CCGGACAGAA ACGGGCATCC TAATTTGTTG
CAGCAGGTTC AGAAGTATGT AAAAAAATCA TTGCATCCAA ACAAGGAAGT ATATGTGCAG
CATATTCACC GGCTTGACAG GCCGGTGAGC GGTATTGTAC TTTTTGCTAA AAAGAAATCC
ATGCTGAAAG AATTAAGCGA ACAGTTTGCA CAGCGTACAG TTAAAAAATA TTACCAGGCA
TTAACGCGTA AGGTAACAAC CAATGGAAAG GGTGCATTGA ATCATTGGCA TTTCAAAGAT
TCTAAAAATA AGAAGGCAAT ACTTTATAAG GAAGAACAGC AGGAAACATC AGCTGTATCA
TTAGGATATA GCACGTCAGA TTACAATGCA GATTATACGT TGTGGGATAT ACAGCTGAAT
ACAGGAAAGT ATCATCAGAT ACGTGCTCAA TTGTCTTTTG AAGGATATCC CATATTGGGT
GATGAATGCT ACAAATCTAC TGATGTGTAT GCACCGAATG CCATTGCCCT GCATGCTTGT
AAATTAGAGT TTGTACATCC TGTGAGTAAA GAATCAATGC GTTTGGAAGC ACAGCCAAAT
TGGCTTGTAT AA
|
|---|
| Protein sequence | MSIIIQVPDH ILYEDNYILV VNKPCSLMVE PDRNGHPNLL QQVQKYVKKS LHPNKEVYVQ
HIHRLDRPVS GIVLFAKKKS MLKELSEQFA QRTVKKYYQA LTRKVTTNGK GALNHWHFKD
SKNKKAILYK EEQQETSAVS LGYSTSDYNA DYTLWDIQLN TGKYHQIRAQ LSFEGYPILG
DECYKSTDVY APNAIALHAC KLEFVHPVSK ESMRLEAQPN WLV
|
|---|
| |