Gene CHU_3620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3620 
Symbol 
ID4183604 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp4174628 
End bp4175434 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content41% 
IMG OID638073607 
ProductTPR repeat-containing protein 
Protein accessionYP_680196 
Protein GI110639986 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCA AAATATGTAA CCGAAAAAAT TGCAAACGAT CTGTACAAAA AATGAGAATA 
CGCTCTTTAT TAATTATCCT TACAATAGGT TTATTACTGG TAAATGCAAT TTGTGTTTCC
GCGCTTGGTC AAACGAGTGA AAGCATTGCC CGCGGAGATG TGTATTTTGG TTTAATGCGC
TACCGCGATG CGATTGCCTG GTATAAGCTG GATTCCACAA AGGCTGAGGC CCAATGGAAA
ATTGCCCGTG CATATGTTTG CTACGGGGAC AACGCAGTGC CGGCAGAGAA AGAATATAAT
TTCAGAAATG CTGTACGTGC GGCAAATAAA TGCATCGAAC TGGAAGAAAC CAATGCCAAC
GGCCACACCT GGCTTGCTGC GGCACTTGGC AATACAGCTA TGTATGAAGG CAGTAAAACA
AAAGTTCGTT TATGTACGCA AATAAAAAAA GAGTTGAACC GTGCAATAGC GTTGAACCCT
AAAGATGATA TTGCGTATTC TATTTTAGGT TCTTTTTACC GCGAGATAGG CAACATAAGC
TGGCTTGAGA AACAGCTTGC CATGACATTT ATCGGAAAGA TTCCCGATGG AACATATGAA
GATTCAGAAA AAGCTTTTGC TAAAGCCATT GCATTAAACC CCACGATCAT GCGTCATTGG
TATGAACAGG GTTTGCTTTA CAAATACTGG AATAAAAACG AACAGGCGAT TGCATCCTTT
AATAAAGCCA AAGCATGCCC GGTATTTGTC TCCAGCGACA ATAAAAGACT CGCAGCAATA
GAGGTGTATT TAAAAAATCT TCAATAA
 
Protein sequence
MAAKICNRKN CKRSVQKMRI RSLLIILTIG LLLVNAICVS ALGQTSESIA RGDVYFGLMR 
YRDAIAWYKL DSTKAEAQWK IARAYVCYGD NAVPAEKEYN FRNAVRAANK CIELEETNAN
GHTWLAAALG NTAMYEGSKT KVRLCTQIKK ELNRAIALNP KDDIAYSILG SFYREIGNIS
WLEKQLAMTF IGKIPDGTYE DSEKAFAKAI ALNPTIMRHW YEQGLLYKYW NKNEQAIASF
NKAKACPVFV SSDNKRLAAI EVYLKNLQ