Gene CHU_3547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3547 
Symbol 
ID4186601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand+ 
Start bp4102492 
End bp4103106 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content35% 
IMG OID638073534 
Productouter membrane protein 
Protein accessionYP_680123 
Protein GI110639913 
COG category[S] Function unknown 
COG ID[COG3652] Predicted outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.00647416 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.0413826 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATGCAA TCATGAAAGA CATATCAAGT ATTAAAACAA TCTTTCTTCA GATAAGTTGC 
TTTTTAGGAT TAATGCTGGG GGTATCCGTA TTATTTTCAA GTTCCTTCTG CAATAAATCA 
GCAGCCAAAT CGGCTTCCAT AGTAAATCAG GTCAATGATT CAAAATTCAG TTCAGATGCA 
GACCGAAAAA ATGCGCTGAT TTTAGTTTCA ACAGCAGAGA TTTGTTTGAG GGAAATTAAA 
CTCGCACAGT TAGCTCAGAA GAGAGCGAAA ACAGCAGATG TTAAAGAATT GGGCAAAATG 
AATGAAGAGT TTTATACACA AAAATTATTA TCTGTTATTA AGCTGGCAAA AATAAAATCC 
ATCTCGATTC CAACATCGCT TAGCACAGAA GGCGAAAAAA TTTTTACGGA GCTTGAGAAT 
AAATCAGAAG CATCGTTTGA TGAATATTAT TGTGACGAGA TGATATACAA TCATAAGCAA 
ACGATTAATT TTTTTGAAGC CGTTTATTCG GAAACCAGTG ATGAATATAT AAACGCCTGG 
GCTAAAAATA TGATTCCGGA TCTGGACAAG CAATTATCGT ATGCAGTGCT TTGTCAGAGA 
AGTGCAACTA AATAA
 
Protein sequence
MHAIMKDISS IKTIFLQISC FLGLMLGVSV LFSSSFCNKS AAKSASIVNQ VNDSKFSSDA 
DRKNALILVS TAEICLREIK LAQLAQKRAK TADVKELGKM NEEFYTQKLL SVIKLAKIKS 
ISIPTSLSTE GEKIFTELEN KSEASFDEYY CDEMIYNHKQ TINFFEAVYS ETSDEYINAW 
AKNMIPDLDK QLSYAVLCQR SATK