| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3425 |
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| Symbol | ysh1 |
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| ID | 4186298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3905384 |
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| End bp | 3906739 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638073415 |
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| Product | metallo-beta-lactamase superfamily protein |
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| Protein accession | YP_680004 |
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| Protein GI | 110639794 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACTGA CATTTTGGGG TGCCGCAAGA AAAGTGACGG GGAGCATGTA TTTGTTAGAA
TCGCTTGGAT ATAAAATACT GATTGATTGC GGCTCGGATT TTTCAGACAG GCACAAAGTA
TTAACCGGAG GCTTATTTCC TTTTGAAGCT TCAGAAATTG ATTTGGTGAT TCTTACGCAC
GCACATGTCG ATCATTCCGG AAATATTCCT GCGCTTATCC GGGCAGGCTA CCGCGGACAG
ATTCTTTCAA CGGCACCTAC AGCAGAATTG TCAGAATTGC TGTTTGCCGA TTCAGCCTAT
ATTCAGCGGG CAGAAAAAAA AATAGCGAAC TCTGCGCCTA GCGATTATTC GTATAAGCCC
GTTGATCGGT TTATTCCGAT TGCATTCAAT AAAGATTTTG AATTAAATGA ACGTATAACG
GTTCGTTTAA CTCCTGTCGG ACATATTCTT GGTGCCGCAA GTGTTTTTGT AAAAGTTGAA
GAAGAAGGAA AAACCAAAAC AATTCTTTTT TCCGGAGATG TGGGCCGTGA TAACTATCCG
TTGCTTCCGG ATCCGGAGCA ATCGCCGCAG GCCGATTATG TGCTTTGTGA AACCACCTAT
GGAAACAGGG TACACAAAGA AACCGAACCG GCAGAAGAAA TTGTAAAGCG TATCGTTACC
GAAGCCTGCG TAGACAAACC CGGCAGATTG ATTATCCCTG CATTCAGTTT AGGGCGGACA
CAATCGCTGC TGTATACCTT AAATAAATTA GCGCTGAAAA ATGAACTGCC GCCGATTAAA
GTGTTTACAG ATTCTGCATT AGCAGCTGAA GGCACAAATA TCTATTCAAA ATATTCTTCA
TTAATGAATG GAGAAGCGCT GGCCATTAAA GCGCAGGATG AGTCCTTATT CGATTTCGAA
AATCTGGATC ATGTTAAAAC ATTCAAGGAA AGTAAAAACA TATCCAATTA TTTAAAACCA
TGCATTATTC TTTCATCTTC CGGCATGATT ACCGGAGGCC GTATACAACA CCATATCCGG
CAGAATATAC AGAACCCGTA TTGTACGATA TTATTAGTAG GCTATGCCGT AGAAGGCACC
ATTGGTCACG ACTTACTGGC GGGGAAACAA ACCATCCGTT TTAAAAAGCG TTCCATTCCG
GTTGCTGCAA AAATTATCTA TACAGATATA TTCAGCGGAC ACACTGATGT AAACGGATTA
ATCAAATACC TGGGGCATCA GGATAAAGCA AAACTGAAAA AGATATTTCT GGTGCATGGC
GAACATCAAA GCATGCTGGA TTTTGAAAAA CGACTGCACG AAGAAGGCTA CAACAATATT
GAAATTCCTG ATTATGGCCA ATCGTATGAT TTATAA
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| Protein sequence | MKLTFWGAAR KVTGSMYLLE SLGYKILIDC GSDFSDRHKV LTGGLFPFEA SEIDLVILTH
AHVDHSGNIP ALIRAGYRGQ ILSTAPTAEL SELLFADSAY IQRAEKKIAN SAPSDYSYKP
VDRFIPIAFN KDFELNERIT VRLTPVGHIL GAASVFVKVE EEGKTKTILF SGDVGRDNYP
LLPDPEQSPQ ADYVLCETTY GNRVHKETEP AEEIVKRIVT EACVDKPGRL IIPAFSLGRT
QSLLYTLNKL ALKNELPPIK VFTDSALAAE GTNIYSKYSS LMNGEALAIK AQDESLFDFE
NLDHVKTFKE SKNISNYLKP CIILSSSGMI TGGRIQHHIR QNIQNPYCTI LLVGYAVEGT
IGHDLLAGKQ TIRFKKRSIP VAAKIIYTDI FSGHTDVNGL IKYLGHQDKA KLKKIFLVHG
EHQSMLDFEK RLHEEGYNNI EIPDYGQSYD L
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