Gene CHU_3413 details

Gene Information

• Locus tag: CHU_3413
• Symbol: ompH
• ID: 4186286
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cytophaga hutchinsonii ATCC 33406
• Kingdom: Bacteria
• Replicon accession: NC_008255
• Strand: +
• Start bp: 3892122
• End bp: 3892742
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 638073403
• Product: ompH family outer membrane protein
• Protein accession: YP_679992
• Protein GI: 110639782
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2825] Outer membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGATCAGGT TCCTGGTTAT CCAAATCCTA CCTACAAACC GCACGTTACG TTCACAATTG 
GTCAACAAAT CCGTTAGATA TATGAAAAAG ATATGTTTGG CATTATTCTT GACTTTAGCC 
TCGTTAATGG CCTGGTCACA AAAATTTGGC TACATCGATT CTGAATATAT AATCAGCCAG 
ATGCCCGAAT ATAAAAAAGC GCAGACGGAG TTAAATCAAT TTTCGTTGAA ATGGCAAAAA 
GAACTGGAAG AGAAACAGTC AAAAATTGAC AAAATGAAAG AAGAATTCCA GGCAGAAGAA 
ATATTACTTA CCGATGATAT GCGCAAAGAA CGTTTAGATA CGATTGCAGC ACATGAGGGT 
AAATTAAGAG ATCTTCAACG CAATTATTTC GGTTTTAAAG GTATGCTGTA CCTGAAAAGA 
CAGGAATTGG TAAAACCTGC TCAGGATAAA TTATTTGCAG CAGTTGAAAA AGTAGCAAAA 
AAAGAAAAAT ATGCTATTAT CTTTGATAAA GCAGGTGAGC TGGTAATGGT TTACACAGAT 
CCTGCACACG ATTGCTCCGA TAAAGTACTT GAAGCTTTGG GACTAGGAGA TAAAAATGAT 
GTAGTCCCCA CAAATAAATA A 

 

Protein sequence

MIRFLVIQIL PTNRTLRSQL VNKSVRYMKK ICLALFLTLA SLMAWSQKFG YIDSEYIISQ 
MPEYKKAQTE LNQFSLKWQK ELEEKQSKID KMKEEFQAEE ILLTDDMRKE RLDTIAAHEG 
KLRDLQRNYF GFKGMLYLKR QELVKPAQDK LFAAVEKVAK KEKYAIIFDK AGELVMVYTD 
PAHDCSDKVL EALGLGDKND VVPTNK