| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3207 |
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| Symbol | rhsD |
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| ID | 4183860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3643584 |
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| End bp | 3651125 |
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| Gene Length | 7542 bp |
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| Protein Length | 2513 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638073200 |
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| Product | RHS repeat-containing protein |
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| Protein accession | YP_679790 |
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| Protein GI | 110639580 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.127821 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCTTA TGAGAACTAA TTTCTTTATT TCCTATCTAT TCTTTTTTCT GCTAAGTATT
TCATCAAATG CATTTGAAAC GAAATATATG GTTGCTATGG ATAAAGCGGC ATTTGGAGCA
GTGGATAATG CAATACCTAA ATTAAAAATA ACGGATCAAT TTGCAGGCAT CACACCTGTA
ACATATACAT ATAAAGTAAA TCTTAAATAT ACGCGTTCAC AATTAACAGA TCGTATCAAT
GCTACGGCCT GGAATTATGG ATTGACGATG GTTGTTAAAA TTAAAGATGG ATCAGGAAAT
GTGGTAGGTA CTTCTTCTGC ATTTACCCTG AATCTTAATT TTAAAGATGC CTCAGATGCA
GCAGGAAGTA TATACGAAGA TGTTTTTTGG ATAAGCAATG ATTTTTCATA TGTAAGTAAT
CCAACAGCTG AATTATATAT CACCGCTTTC CCTTCAGGCA ATACAGCAAC GGTACCATCG
GATATTGCTC TTGAACTGAC ACAAATTCAA ACAGTGACAG ATATTTTCAA TCCGGCTGCA
GTGGTTGCTT TTAATAAAAC ATCGGACAAC AAAACTATTT ATTGGGAGTA CAGCACAGGT
GCTCAGTTCT ATGATCTGGA ATGGGTATAT ATAGATGACT ATGATGCTGT GACCACTTTT
GCACAAGATG CAGATGCGTT TATAGCAAAA GAACCTGTAC GGATTTCAAC AGCATTGCAA
ACCTTTAATT TTCACAATAC CTATTCTAAA GGAAAAATTT ATTTTAGAGT AAGGGGTGTT
AAAATTGATG CAGTCACCAA TCTTGTAACT AATGGTGTCT GGAATTATAA TGCTGCTACA
AAAATCATAA ATACAGATGA TTTTGAAGGA TATAAAAACT GGCAGGCAAC AACAACATTT
ATTGAAAACG GAAGATACAA AAAAAGTATT GTGTATGCAG ATGGTTCAAC ACGTACAAGA
CAATCCCAGA CTTCTATGAA TTCAGATAAA ACGGTAGTTA TATCTGAAAC AAAGTATGAT
TTTGAAGGAA GGCCCGTTGT AAATATTATG CCATTTCCAT ATGCAGCGTC TACGTCAATG
AACTACGTGG CTAATACCAA TGTGTTTAAT GTAGCGCTGC CAACGGATCA TCAGAAAAAA
GCTTACGACA ATCCTAACAA ATCGCTTGCA CTTTCAACCG CAAGTGGTGC ATCACAATAT
TATTCAGCAT TGAATCCTTT TCCGGCAGGC GCAACAAGAA CGTATACACC GGATGCGCAA
GGATATCCGT ATTCTCAAAT AATATATACA CCGGATAATA CCGGCCGTGT TTCCAGACAA
AACACAGTTG GTTCAGCATT TAAAATGGAA CTGCAAGCAA ATGCAAATAT TAAAGACCAG
CATTTTGTTC AGAATTACTA TGGTACACCA TCATCTACCG AATTGTACCG GATGTTTGGC
AGTAATGTCG GGAATGCACA TCATTACACT AAAAATTATA CGATAGATGA AAATGGTGTT
ATCTCGATTC AATATCAAAA TGGCGAAGGT AAAGTAATTG CAAGTGCGCT GAACGAAAAA
CCAACAACCA ATTTATCACC TGTTTCAGAT CAATACAACC AGACAGCCTT GTTTGATGGC
GGAGTATCGA TTCACAGGCT ATCTGATCAG AATGATGTTA ATACGCAGGG ACGTTTTAGT
ATCAGTACAG ACAAAATAAT AAATCTTGTA AGCGGTCAGC AATATACTTT CAAATATGAT
TTAACGAGCG TATTGAATTC CCAGAACGGT GCCTGTTTAA CATGCGGCTA TACCGTTGAA
ATAAGTGTTA TAGGGCCTGA TGGCAGATCT ATCCTTACAG ATGACACCCC ACAGCATGAT
ACCATACCCT ATTATTCTAA AGAGCTGTTA CCCACAGCAA CGGGATGTTC TGCAGTTACA
TATCCAACAG TTCAATTGGC ATGTACATTT AATTTGCTGG GTGAATATAT TGTGAGTAAA
AAATTATATT ATAATTCGGC AGCTGTACAG ACATTGAATG CAATCAGTGC AGCTTCTATA
CCAGTTCAGA TGGTATTAGA TAACGTATTA TATACAGATA AAAATGCATT TGTAAGTGCC
TATACAGACA AAAAACTGAT TGCTGCAAAC TGCGGTTTTA CCTGCAACGA TAACTGCGAA
AATTATAAAA AATCCTTTGC CGGTAAAATT AATCCGGCTA CGGGGGCTAT GTATACAGCA
GCAGAATTGG CAACGATCAA AGCAAACTGT ATGACAGATT GCGGAAATGA AGTTACAAAT
CTGCAAGGGT CTACAGCAGA TATGCGCTGT AAATCATATA AGCAGCAAAT GCTCGATCAG
TTAAGTCCGG AAGGTTATTA TTATACAAAA CTCAATTGGA TAAGTGGAAT TTATGCTTCG
GTAACATATA CACCAGTAAA CGGGGTTTCA CCGTCACTTG CCGTTGTAAC TAATCCGGAT
TCGTTTAACA ATGTTTGGGC TTCAGATATG TTATCAAAAC ATCCCGAATA TTGTGTATAT
AAAAACTTAT GTGAAAATAC AAATTCAACT TACACAACAG CTTTAAATAA TAGAGACCAA
TATGATATTT ATAAATTTGG CAGTTTTGAT CCGGTTAATG GAGTAACCGG CTGGTCTGAT
GCAGCTGCAA AAGGATTTTT GAGGCCAATA AATATAAGCG CTCCAAGTTT TACCGTGCCA
GGGCTTCCGG CATTCAATTT AGGAAGTATA CCTACTGCTC AATTGGATCC TTTTTTCACA
ACAGGCATTT CAGTAACGAA TCCACTATAC AATCTGCGGG ATACCTTATT ATTATTTTTT
AAGGAAGGTG GCATAATAGA TTATAATGGA AATGGCAGTA AAGCAGATGT ATTATCCGCA
TGGGAATTTG CATCCTTTTA TTATCTGCAG GGTAATATAG ATGGTATAAC AGGCGCAATG
AATTTGCCAT TGCCTGCATT GCCTTCTGAT TATGATGTTA ATCGCTGGAA TATTTTTAAA
GGTATTTACC TGACTAAAAA AGATGCATTT ATTAAAAAGA CAATCCTGCA ATCAGGGTGT
AGCGCGCCAA ATGGTTTTAA AGACCCAACG TTGGAGTCTA CAGTTATACG TAGCCAGCCT
GAAGTAATTA ACCGGCAGAA TTTAACTGAT TGGGCAGCTT TACAGACCAT AGGTACTAGG
GGATGCAGTG AGGAAGTAAA TCAAAAAAGA GCTTTAAACT ATCTGAGTTT GTTAGAAACA
ACTTACCTCA CGATCTACCC GACCATTAGC ATGCCCGATA TTAATTTGCT TTATTATCTG
TTTTATAAAT ATTTGGGCAG AGGTTGTGCA ACCGATAACC CATCTGGTTA TATTCGTTGT
GATCAGATTG CTACCGACTC ATATTTAATC CGTGCACAGC AAATTCTTAC CGGCTATGGT
ATGAGTCTTA ATACAATCTG TACAAGCAAT GCATACGTAA CCTGTACATC CACAACTACA
GGAGGAACAA CACATTTTTA CGGGCCGGAT CCGTTATACG GAGCACTTGT GGATCTCATC
AATGAATATA TTCAAAGACA CAGAAATGAA ATTGAAATCG TAACAGGTGA TCCGGATTGT
GACGAACCTA CCGCATCGGT ATTTGATGAC ATAAATTCAT ATACCTCAGG TGTCTATAAC
AGCAGTATTT GGAATGTAAA ACAATTCACT AAAATAGCAA TCGTTCAGCA TCCGGCAGGT
TATCCGTATA TAGGTAAAGT ATTTGTGCTT TTAAAAGATG TAAATGGTGT AGAATATATC
TCATTTGATA AAACGTTAAC GCTTGTCCGG AATGCTGGTG TTGAACTTAA TAATTTAAAA
GCGTTGTCCA ATCTCCAAAC AATTCCTTTT ACAATAGCGC CTTACAGTAC CAGCCTTAGT
ATGGATGTTG TTAAAATGGA CAATTCAAAA GTTAAAATTG AATTGGGCTA TGGATATCCA
CAAACCGTTA TAAGTTGTAA TAATTATTAT ATATATAATA AATTTTTTAT AGTAAATAAA
TCGACAAATG TATCATTAAC TAATTATTAT TCTGATTTAA CATCTGTACC TACAACCACA
ACAGTTTGTC AGATTGATTA TACCGTAACA CCGGATCCGG ACCCGTGTGA TCCGTTGGCC
ACAAGCAAAG ATCCGCTGTG GTTTCCATTT TGCATGCAAA AAGAAAAAGA CAAATGTGAA
ACCGAGCAAA GAGCAATTGC CAGTATAGAA GCAAATGAAT TATGGGAAGA CCAGTTAAAT
ACACAGCTTC AGGGTCTTTT GACTGTGCAT TATAATAAAT GTTTTTCTAC GCCGTTTAAA
GAAAATTTCT ATTACGAAAC CATTGAACTG AAACAGCTTT ATTACACATT ATATTATTAT
GACCAGGCAG GAAATCTTAT ACAGACAGTG CCGCCAGAAG GCGTACGCTT ACTTAAGAAA
GAAGCTTTTA ATACAAAAGG AGAATATTTA GGTGTACTGC AGCCTACGCA CGGGTTATTA
ACCAAATACA AATACAATAG CCAGAACCAG ATTACCTATA AAATAACACC GGATGAAAGC
GGAGCCAATC ATGATATCCC GTCTTACACC TTTTATAACG ATAAAGGCCA GCCGGTACTT
TCACAGAACG CTAAACAAAA AGTTACCAAT ACGTTTTCGT GTGTAAGTTA TGATAAGCTT
GGCCGAGTAA CCAAAGTAGG AGATATTGTT AATACTACCT TATTAGCGAA TTTGCTGGAC
CGTACCAAAT ACGATCAGAA TGTGATCAAT TACTGGAATG CAGATTTATT TACAGCAGGT
AATGCGCCGA CCGATATTGT TGCTACTACC TACGATACGC CCGCAGGTTC TGATCCGGCT
TACACCAACA GAGGGCGGGT TACGAAAATA AGCCGGGCAC TGGATCTGGC CAAGCTGAAC
GCTTCCAATA TGGATTCTTA TATTACCTAT CAATACGATG TACATGGTAA TGTGAAAACA
TTGGTAAATG CTTTACCCAT GTCAAGCACT GCACCAGGCG CGATACTTTC CTTTACGATG
GATTATACGT ATGATCTGTT AAGCGGAAGT GTGAAGCAGG TGATACTGGA TAAAGGCTTG
CCCTCACAGT TTATACACAA GTATACCTAT GATGCAGACA ACCGCTTAAA AACGGTTAAG
ACATCCCGTA ACGGTCTTAT ATGGGAAGAA GACGCCCGCT ACCAATATTA TTTACATGGA
CCCATTGCCC GTACAGAATT GGGAGAAGAC CGGGTACAGG GGATAGATTA TTATTCAACC
TTGCAAGGCT GGATCAAGGG TATAAACACC ACTACTCAGC AGTCTACTTA TTTTAATGGT
GGAAATACCT ATAATAATAC CGGTGCAAGA GACGTAGGCG GCGATGGTGC CGAAGGTAAA
AACAAATATG TGGCACAGGA TGAATACATG ATGAACCTGG GGTTTTATAA AGGGGATTAT
GTACCTGTAT CAACAGTTCT GGCACAGCTG GGAAATGGTT CCGGAGTTCA TGCAGACAAT
CTCTGGAAAA TGTTCAATGC TTCTGCAACA AGTCTGCAGG GGCTTTACAA TGGAAATATT
GCTTTTTGGA TCAATGACCG CTCAATGCCT AACTGGTCTC CACTAAGAGA TAATGCCTAT
GTATTTAAAT ACGATCAGCT GAACAGGCTT ACCAATGCCT ATTATACCGA ACAGTACGAT
TACAATTATA CCACGAATGA GCTCGTATGG AAAAATCGTG AACTGACTAA TAAGTATTAT
GATTTCAGGG CAAAATACGA TCTGAACGGC AATATAAAAT CCATGCTGCG TATGTCTTTT
ACCGTAATGG ATACGCTTGC GTACAACTAT TCATATGCGA CTGTAGGAGG AACAAACATG
CTGGAGGATA ACAGGCTGCG GTATATTACG GACTTAGTTG CACCAGGTAC TGAAACATAT
GATATAGATG ATCAGACAGC AGGAAATTAT ACGTATGATA ACATCGGAAA CCTGATTGGG
GATGTTTCTG AACAGATCGC TTCGATTACC TGGAACCGGG AAGGAAAAGT GACTGCACTT
ACCCGCAGCA CCGGATCAAC CAAGCCGGAT TTTATTTTCA AATACGACGT AAACGGCAGA
AGAATCTATA AAGAAGTTAA AGGTAAAACA CCTGCCGGTG CATTAGATAA TACCAAGATA
ACGCGTGTAT ATTATGCGTA TGACGGTACA GGCAATATGC TTGCAACTTA TGAAGGTATC
ACAACAACGT ACCCGATCGA ATTCAGGCAG GTGGATGTAA GTATTTATGG TAGTAAACGT
TTAGGTGTCT ATGCACACGC TACACCTGTA ACGCGTACTG CGCTTGTAGG TGGTTTAATG
AGGAATGCAA ACTTCGATAA GTCAACCTCT CAGCGGAGAC CTGCTTATAC ACAGTATCAG
TTAGAAGATC ATCTGGGCAA TGTACGTACA GTTATTGCAG GCCTTAAGTT TGCCTTGGAT
CAGAATAACG ATGGCACTCC GGATGTTTAT AGTGCTTATG TATTGACGGA GAATGATTAT
TATCCGTTCG GCATGCAGAT AGCCGGGGGG TACCGCAGAT ATTCAACGAA TAACTATAAG
TTTGGCTACA ACGGCAAACC AATGGACAAC GAATGGAACG GTGATGGTGC CATGTACGAT
TATGGTTTCC GTATCTACGA TCCGCGCATC TGTAAGTTCT TAAGTGTGGA TCCGTTGAGC
CCGAGTTATC CGGAGTTGAC GCCGTATCAG TTTGCGAGTA ATACGCCTAT AAATAGTATT
GATTTGGATG GGTTAGAACG CCTATTGTCA ATAATAGATG AAAAATCAGG TGTGACCTTA
ATTGCTAAAG TTGATATTAA TAATCCAGAT TATGTAAATG GATCAGGAGA TCAATTTATT
GGTTCAATGA AATTGGGTTA TTCATATTCT CAAATAGTTA AAAATACATA TGGGAGCAAT
ATTAGCTTTT TAAATAAAAG TGAATTGTAT ATAAAAATAA AGGCAGATGG AAGTTATAAA
GCATATGCTA ATTATGAAAA TTCAGCTGCA GAAAGAACTT TTGTTAGAGC CGAACAATTT
TTTTACCACA ATATGAAAGG TGCAGAAGTT GGGGGCATAG GTATTAGTGG GAAGGCATCG
TGGCAAGTTA ATAGTCTTGG AGTAAGAGGA GAATGGTATC AAAATAAATT AGGCGAACAA
GGATTGAATT TTGAATTAGA TTATTCAAGA GCGGGTACTA TTAGTTATGG CGCTAAATTA
GGTGATATTG CTAAACTTAG GTATAGTTGG ACATCATATG TTCCTAGTTT AGAGGCAAAT
GCATATCTTT TTATTAAAAA AACACCATAC ACTGCAGGAA AATCAATAGC TAACTATTGG
GAAGGAAGCG GTACTATTCC TATTGCTGGT GGAACTAATC TTAAATTTGA AGGTAATTCA
ACTGGAACAT ATAGATTTGG GTTGAATTGG AGTACTGGTG AACAGAGAGC AAATCTAAAA
GCAGGTTATA CCACAAAAAC AACATATAGA TGGACATGGT AA
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| Protein sequence | MILMRTNFFI SYLFFFLLSI SSNAFETKYM VAMDKAAFGA VDNAIPKLKI TDQFAGITPV
TYTYKVNLKY TRSQLTDRIN ATAWNYGLTM VVKIKDGSGN VVGTSSAFTL NLNFKDASDA
AGSIYEDVFW ISNDFSYVSN PTAELYITAF PSGNTATVPS DIALELTQIQ TVTDIFNPAA
VVAFNKTSDN KTIYWEYSTG AQFYDLEWVY IDDYDAVTTF AQDADAFIAK EPVRISTALQ
TFNFHNTYSK GKIYFRVRGV KIDAVTNLVT NGVWNYNAAT KIINTDDFEG YKNWQATTTF
IENGRYKKSI VYADGSTRTR QSQTSMNSDK TVVISETKYD FEGRPVVNIM PFPYAASTSM
NYVANTNVFN VALPTDHQKK AYDNPNKSLA LSTASGASQY YSALNPFPAG ATRTYTPDAQ
GYPYSQIIYT PDNTGRVSRQ NTVGSAFKME LQANANIKDQ HFVQNYYGTP SSTELYRMFG
SNVGNAHHYT KNYTIDENGV ISIQYQNGEG KVIASALNEK PTTNLSPVSD QYNQTALFDG
GVSIHRLSDQ NDVNTQGRFS ISTDKIINLV SGQQYTFKYD LTSVLNSQNG ACLTCGYTVE
ISVIGPDGRS ILTDDTPQHD TIPYYSKELL PTATGCSAVT YPTVQLACTF NLLGEYIVSK
KLYYNSAAVQ TLNAISAASI PVQMVLDNVL YTDKNAFVSA YTDKKLIAAN CGFTCNDNCE
NYKKSFAGKI NPATGAMYTA AELATIKANC MTDCGNEVTN LQGSTADMRC KSYKQQMLDQ
LSPEGYYYTK LNWISGIYAS VTYTPVNGVS PSLAVVTNPD SFNNVWASDM LSKHPEYCVY
KNLCENTNST YTTALNNRDQ YDIYKFGSFD PVNGVTGWSD AAAKGFLRPI NISAPSFTVP
GLPAFNLGSI PTAQLDPFFT TGISVTNPLY NLRDTLLLFF KEGGIIDYNG NGSKADVLSA
WEFASFYYLQ GNIDGITGAM NLPLPALPSD YDVNRWNIFK GIYLTKKDAF IKKTILQSGC
SAPNGFKDPT LESTVIRSQP EVINRQNLTD WAALQTIGTR GCSEEVNQKR ALNYLSLLET
TYLTIYPTIS MPDINLLYYL FYKYLGRGCA TDNPSGYIRC DQIATDSYLI RAQQILTGYG
MSLNTICTSN AYVTCTSTTT GGTTHFYGPD PLYGALVDLI NEYIQRHRNE IEIVTGDPDC
DEPTASVFDD INSYTSGVYN SSIWNVKQFT KIAIVQHPAG YPYIGKVFVL LKDVNGVEYI
SFDKTLTLVR NAGVELNNLK ALSNLQTIPF TIAPYSTSLS MDVVKMDNSK VKIELGYGYP
QTVISCNNYY IYNKFFIVNK STNVSLTNYY SDLTSVPTTT TVCQIDYTVT PDPDPCDPLA
TSKDPLWFPF CMQKEKDKCE TEQRAIASIE ANELWEDQLN TQLQGLLTVH YNKCFSTPFK
ENFYYETIEL KQLYYTLYYY DQAGNLIQTV PPEGVRLLKK EAFNTKGEYL GVLQPTHGLL
TKYKYNSQNQ ITYKITPDES GANHDIPSYT FYNDKGQPVL SQNAKQKVTN TFSCVSYDKL
GRVTKVGDIV NTTLLANLLD RTKYDQNVIN YWNADLFTAG NAPTDIVATT YDTPAGSDPA
YTNRGRVTKI SRALDLAKLN ASNMDSYITY QYDVHGNVKT LVNALPMSST APGAILSFTM
DYTYDLLSGS VKQVILDKGL PSQFIHKYTY DADNRLKTVK TSRNGLIWEE DARYQYYLHG
PIARTELGED RVQGIDYYST LQGWIKGINT TTQQSTYFNG GNTYNNTGAR DVGGDGAEGK
NKYVAQDEYM MNLGFYKGDY VPVSTVLAQL GNGSGVHADN LWKMFNASAT SLQGLYNGNI
AFWINDRSMP NWSPLRDNAY VFKYDQLNRL TNAYYTEQYD YNYTTNELVW KNRELTNKYY
DFRAKYDLNG NIKSMLRMSF TVMDTLAYNY SYATVGGTNM LEDNRLRYIT DLVAPGTETY
DIDDQTAGNY TYDNIGNLIG DVSEQIASIT WNREGKVTAL TRSTGSTKPD FIFKYDVNGR
RIYKEVKGKT PAGALDNTKI TRVYYAYDGT GNMLATYEGI TTTYPIEFRQ VDVSIYGSKR
LGVYAHATPV TRTALVGGLM RNANFDKSTS QRRPAYTQYQ LEDHLGNVRT VIAGLKFALD
QNNDGTPDVY SAYVLTENDY YPFGMQIAGG YRRYSTNNYK FGYNGKPMDN EWNGDGAMYD
YGFRIYDPRI CKFLSVDPLS PSYPELTPYQ FASNTPINSI DLDGLERLLS IIDEKSGVTL
IAKVDINNPD YVNGSGDQFI GSMKLGYSYS QIVKNTYGSN ISFLNKSELY IKIKADGSYK
AYANYENSAA ERTFVRAEQF FYHNMKGAEV GGIGISGKAS WQVNSLGVRG EWYQNKLGEQ
GLNFELDYSR AGTISYGAKL GDIAKLRYSW TSYVPSLEAN AYLFIKKTPY TAGKSIANYW
EGSGTIPIAG GTNLKFEGNS TGTYRFGLNW STGEQRANLK AGYTTKTTYR WTW
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