| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3196 |
|---|
| Symbol | gspE |
|---|
| ID | 4183849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 3635085 |
|---|
| End bp | 3636521 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638073189 |
|---|
| Product | type II general secretion pathway (GSP) E protein |
|---|
| Protein accession | YP_679779 |
|---|
| Protein GI | 110639569 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAT TTGAAAGCAT ACAATTATCT GCTAAAGAAA TTCAACGCCT CACACCCGAT
CAGGCCTGGC ATTACCATAT CCTTCCGGTT CCATCCGGAT ATACCGATCA AGGAGATTTT
TTTATTTCGG ATCAGAAAAA CGGCTTGCAG GCACAGGAAG ATTTAGAAAT TATATTCGGT
TCAACGCAGC AATTGCTGGA GCTTGAGCAC GAAGCGATCC TGAAACTGCT TTCTAAATAT
TACCGTAAAG AACATCAGAC AGGTTCAACG AATACCTTAA GTTATGATTC TTCTTCAGAT
GATTTTTTGA AGAAGCTGAT CGTAGAAGCC AAACAAATTC AAAGCAGTGA TATTCATTTA
GAAATCTACG AAGCGAAATG CCGCGTACGA TTACGGATTG ATGGGCAGAT GGTAGAACGC
TTTATCATTG AGCAGACGCA TTACCCGTCT TTGGTGAACC GTATTAAGAT TATGTCGCAT
CTAGACATTT CTGAAAAAAG ATTGCCGCAG GATGGACGGA TTTTTTTTCA GTTTGGGGAA
GGCAAATTTG ATATCCGTGT TTCTGTATTG CCTACCTTGC ATGGAGAAAA AATTGTGATG
CGTTTATTAA ATCAGGACGC AACCAACATC AATATTGAAA CGTTAGGATT TGCACAAACA
GATTTAGAAA ATTACTTAGA CAGTACAAAA CGCAAGCAGG GCCTGATTTT AATAAGCGGC
CCCACAGGTT CGGGTAAAAC AACTACCTTA TACGCCACAT TAAAATTGCT GAATAAAACA
ACGCGGAATA TTTTAACGAT TGAAGATCCC GTTGAATATA CACTCGAAGG CGTGAATCAG
GCACAATTAA AAGAAAACAT TGGATTTAAC TTTGGCAGTG CATTAAAAAC ATTCTTACGG
CAGGATCCGG ATATTATTAT GGTGGGCGAG ATCCGCGATC AGGATACCGC TAACATGGCT
ATACGTCTGT CCTTAACCGG TCACCTCGTA CTTTCAACCA TACACACCAA CTCTGCCTGG
GGCACGGTAG CCCGATTGAT AGATATGGGT GTGCCGCCTT TTTTATTAGC AGGTACACTA
AGTGTTTCTG TTGCGCAGCG TTTAGTGCGG TTATTATGTC CACATTGCAA ACAGCAAACG
CCATTTAGTG CAACAGATTA TCCTAAAGGA TTTAAAGCCC CGATGCATGT AGATGTGCAC
TATATATCCA CAGGTTGTGA ACAGTGTTTC TACACAGGGT ATAAAGGCAG AAAGGCTGTA
TACGAGGTTA TTCCTATTGA TCAGGAGATG GCAGAGTGTA TAAAAAATAC TATCTTTGAA
GTGTCGGATA AATTGAAGGA AAGGAACATC AAAACATTAT CCGATAATGC TTTTCAATTG
TTTGCAGAAG GCAACACATC GTTAGATGAA ATATATTCAT TATTAGTTAA TTTTTAA
|
|---|
| Protein sequence | MDIFESIQLS AKEIQRLTPD QAWHYHILPV PSGYTDQGDF FISDQKNGLQ AQEDLEIIFG
STQQLLELEH EAILKLLSKY YRKEHQTGST NTLSYDSSSD DFLKKLIVEA KQIQSSDIHL
EIYEAKCRVR LRIDGQMVER FIIEQTHYPS LVNRIKIMSH LDISEKRLPQ DGRIFFQFGE
GKFDIRVSVL PTLHGEKIVM RLLNQDATNI NIETLGFAQT DLENYLDSTK RKQGLILISG
PTGSGKTTTL YATLKLLNKT TRNILTIEDP VEYTLEGVNQ AQLKENIGFN FGSALKTFLR
QDPDIIMVGE IRDQDTANMA IRLSLTGHLV LSTIHTNSAW GTVARLIDMG VPPFLLAGTL
SVSVAQRLVR LLCPHCKQQT PFSATDYPKG FKAPMHVDVH YISTGCEQCF YTGYKGRKAV
YEVIPIDQEM AECIKNTIFE VSDKLKERNI KTLSDNAFQL FAEGNTSLDE IYSLLVNF
|
|---|
| |