| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3195 |
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| Symbol | gspD |
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| ID | 4183848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3633106 |
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| End bp | 3635076 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638073188 |
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| Product | type II general secretion pathway (GSP) D protein |
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| Protein accession | YP_679778 |
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| Protein GI | 110639568 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.214012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAAAA AAATTTCCTG TTTTATTATC GGGTTTTTAT TGCTTCCCCT TTTGATAAAT
GCTCAAACTA AAACAGATCG GTTCACTGAA ATCGAAAACA CATTAAATCA ACTTGCAGCA
GGCAATTCAC CTGGGTTAAA AGATCCTATT GATTTTTCTG TATCGGGTGT AAGCATTCAG
GAATTTCTAC GGGGAATTGC AGAAGCACAT GAACTGAACA TTAATGTAGA CCCGCAGCTT
TCGTTTAAGG TCTATAATAA TTTTTCAAAA GAATCGGTGC TAAATGTACT TCTGTTTTTA
GTTCGGGAGT ACGATCTGGA CATACGGTTT TCCGGATCAA TTATGTCTTT TTACAAATAT
ATCCCTCCTG TAGAAGGCAA ACCGGTATAT GTTCAAAAAG ATTTGCAGGT TAGGTATTCT
TCTTATTCAA ATCTGCTGAG CCTTGATCTG CAGGATGACA GTTTGTATTT AGTAGCCCGT
AAGATCACAC AGGTGACAAA GAAAAATGTG ATCCTTTCTT CCGGTATCTC AAACAAACTT
ATTTCCATAT ACATTGAAGA TATGCCGTTC GATGCAGCAT TGAATAAAAT GGCATTTGCA
AACGAATTAA AAGTAGTAAA GACCGATGAT AATTTTTATG TGTTAAAAGG AATCAAAGAA
GGGGATAATA TTTTAGCAGA AGAAAATCCG AATGCAGGCA CGTTCAGGCC CACATATAAT
ACAGGCACAA ACACTACAGC TGCTGCAATG CCGTCTCAAT CCGCAGCCGG CTCAATGATC
CGCTGTCATG TGGATTCTTC TGCTGCCGGT AAAAAAATTC ACCTGGAAGC AATTAATGCT
CCGATTGCAG AAGTAATTAA AGTAGTGGCA ACAAAAGCAA ACATCAATTA CTTTATGTAT
TCGGAGATTA AAGGAAATTG TACCTCATAC GTTTCCGGTG TTACGTTTCA GGAACTGCTG
ACATTTCTGT TGCAAGGAAC GGAATATACA TTTAAAGTAG AAGCTGATTT GTACTTAATG
GGGGAACGTA AGCTTGAAGG CTTGAGAGCG TATAAAGTAG CACAGTTAAA ATACAGATCT
ATTGATAACA TTCAGGAAGT TATTCCAGCG GAATTAAAAA AAGGAGTTGA GATAAAAGAA
TTTAAAGAAC TGAATAGTTT ATTATTATCC GGCTCGCTTC CGCAGATTTA TGAGATTGAA
GCATTCATAA AAGAAATTGA TAAAGTAGTG CCGATGGTAA TGATTGAAGT AATCATTATG
GAAGTACTTA AAAACAGAAT GGTTAAAACC GGAATAAAAG CGGGCTTGAA TGATTCTCTT
GCAACCACAC AAACGAGCGG TACCTTTTTA CCAGGCCTGG ATGTAAAATT AAGCACCAGC
ACCATCAATG ATTTTATTAA TGGTTTAGGC ATCGGCAGCA TTACCAATTT AGGTTCAGTT
ACGCCGAGTT TTTATATGAC CTTAAGTGCA CTTGAAACCA ATAATAATGT TGAAATCAAA
TCGATGCCAA AACTATCAAC GTTGAATGGC CACGATGCAA ACATGAGTAT TGGACAAACT
GTGTACTACG AAGTTCAGAC ACAGAATACG CTGGGTTCTT TAACAACAAA TACGATAACA
ACTGTTCAAT ATCAGTCCGT GCAGGCAAAC CAGACGTTAT CCATCAAACC GCTCGTGTCA
GGTGATGATC AGGTTACGCT AACGATTGAA GTAAATCAGA CTTCATTTGC TAAAAGCAAT
GCAGCCGGTC CGCCCAACAC AACTACAAGT CAATTTAAGT CGATCATTCG CGTAAGAAAT
GAAGAGATGA TTGTACTTGG TGGTCTGGAA AAAATATCGA AATCAATAGA TACCGAAGGA
ACTCCGATAT TATCACGTAT TCCGGTTATC AAATTATTAT TCAGCTCAAA AACTAAAAGT
AAAAGCAAAT CCATTTTAGT GTTATTTATC AAACCTATAA TAATTTATTA A
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| Protein sequence | MVKKISCFII GFLLLPLLIN AQTKTDRFTE IENTLNQLAA GNSPGLKDPI DFSVSGVSIQ
EFLRGIAEAH ELNINVDPQL SFKVYNNFSK ESVLNVLLFL VREYDLDIRF SGSIMSFYKY
IPPVEGKPVY VQKDLQVRYS SYSNLLSLDL QDDSLYLVAR KITQVTKKNV ILSSGISNKL
ISIYIEDMPF DAALNKMAFA NELKVVKTDD NFYVLKGIKE GDNILAEENP NAGTFRPTYN
TGTNTTAAAM PSQSAAGSMI RCHVDSSAAG KKIHLEAINA PIAEVIKVVA TKANINYFMY
SEIKGNCTSY VSGVTFQELL TFLLQGTEYT FKVEADLYLM GERKLEGLRA YKVAQLKYRS
IDNIQEVIPA ELKKGVEIKE FKELNSLLLS GSLPQIYEIE AFIKEIDKVV PMVMIEVIIM
EVLKNRMVKT GIKAGLNDSL ATTQTSGTFL PGLDVKLSTS TINDFINGLG IGSITNLGSV
TPSFYMTLSA LETNNNVEIK SMPKLSTLNG HDANMSIGQT VYYEVQTQNT LGSLTTNTIT
TVQYQSVQAN QTLSIKPLVS GDDQVTLTIE VNQTSFAKSN AAGPPNTTTS QFKSIIRVRN
EEMIVLGGLE KISKSIDTEG TPILSRIPVI KLLFSSKTKS KSKSILVLFI KPIIIY
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