| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3177 |
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| Symbol | rpoN |
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| ID | 4186103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 3617513 |
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| End bp | 3618964 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638073170 |
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| Product | RNA polymerase, sigma-54 factor |
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| Protein accession | YP_679760 |
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| Protein GI | 110639550 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAT TAAGTATTCA GCAGCAGTTA TCTCAGAAAC TATCTCCCCA GCAGATTCAG
TTTATAAAAC TATTGCAGAT ACCGGCAGCA GAATTAGAAT CCCGTATTGA AGAAGAACTG
GAGATAAACC CTGCATTAGA AGAAGGAAAA GAAGAGCAGG CAGAGGAAAA AGATTCCAAT
GAAGAAGAAT TTTCAGATTC AGATGATGAT TATTCAGATG ATGAACTGGA TGTTCAGGAA
TATATCCGCG ATGAAGATGT AGCCGGCTAT AAAATGCAGG GCGACGGGCC ATCGCAGGAC
GATGAAGAGC GTGAATCTCC ATTAGCAGGA ACAACTTCTT TAACCGAAAT GCTTTTAAAT
CAACTGGGTT TTTTACGCCT GGATGAACGG CAGACAAAGA TTGCCGAACA GTTGATTGGC
AGCATTGATG AAGATGGATA TATCCGCCGG AATTTAGATC TGATTGTTGA TGACCTGGCC
TTCTCTCAAA ACATTGAAAC CAATGTAGAA GAGATTGAAG AGGTCTTATT CCGCATACAG
GACTTTGACC CTGCAGGCAT TGGTGCACGC GACTTACAGG AATGTTTGCT GTTACAGATC
GAACGCAGAC ATATGGATGA GCCTGAGGTT ATGCTTGCAC ACAACATCTT GAAAGATTGC
TTTGATGAGT TTACAAAAAA ACATTACGAC AAAATTCAAA AGAAATTTGA CGTAGATGAT
GAATCTATAA AAGCTGCGGT TAATATCATC ACCAAGCTGA ACCCTAAGCC AGGCGGCACT
TCCGGAGATG ATATCAAAAC ACAATATTTA ATGCCTGATT TTATTCTGCA AACAAATAAC
GGCGAACTGG AATTGTTTTT AAATTCTAAA AACGCACCGG ACTTACGCGT AAGCAGAAAT
TATTCTGAAA TGTTTGAGAC GTACGACAAG AGCGCTAAGA ATGATAAAAA ACTGAAGGAA
GCTGTCACGT TTGTAAAACA AAAACTGGAT GCTGCGAAAT GGTTTATTGA AGCGATCAAA
CAGCGCCAGC AAACGTTACT GAAAACCATG CATGCTATTT TAGAATTCCA GAAAGAATTC
TTTTTTGAAG GGGATGAAAG TTATTTAAAA CCGATGATCC TGAAAGATAT TGCGGATATG
GTGAACATGG ATATTTCAAC CATTTCACGC GTTGCAAATA GTAAAGCTGT ACAGACGGAA
TTTGGAATCT ATCCGCTGAA ATATTTCTTT TCTGAAGGTA TCGCGACCGA CTCCGGCGAA
GATGCCAGCA GCCGGGAAGT AAAACATATT CTGAAAGAAA TCATCGACGG AGAGCAAAAG
AAGAAGCCGT TGTCGGATGA GAAGTTAGAG AAAGAATTGA ATAAAAGAGG GTATAACATT
GCACGAAGAA CGGTTGCAAA ATACCGCGAA CAATTGAACA TTCCGGTAGC ACGTTTAAGA
AAGGAATTAT AA
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| Protein sequence | MQKLSIQQQL SQKLSPQQIQ FIKLLQIPAA ELESRIEEEL EINPALEEGK EEQAEEKDSN
EEEFSDSDDD YSDDELDVQE YIRDEDVAGY KMQGDGPSQD DEERESPLAG TTSLTEMLLN
QLGFLRLDER QTKIAEQLIG SIDEDGYIRR NLDLIVDDLA FSQNIETNVE EIEEVLFRIQ
DFDPAGIGAR DLQECLLLQI ERRHMDEPEV MLAHNILKDC FDEFTKKHYD KIQKKFDVDD
ESIKAAVNII TKLNPKPGGT SGDDIKTQYL MPDFILQTNN GELELFLNSK NAPDLRVSRN
YSEMFETYDK SAKNDKKLKE AVTFVKQKLD AAKWFIEAIK QRQQTLLKTM HAILEFQKEF
FFEGDESYLK PMILKDIADM VNMDISTISR VANSKAVQTE FGIYPLKYFF SEGIATDSGE
DASSREVKHI LKEIIDGEQK KKPLSDEKLE KELNKRGYNI ARRTVAKYRE QLNIPVARLR
KEL
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