| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2920 |
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| Symbol | |
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| ID | 4185619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 3332977 |
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| End bp | 3335268 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638072907 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_679504 |
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| Protein GI | 110639295 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.660526 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0739949 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA ACACATTCTT TCTCTTGTTT GTTGCGCTGT TTACAACCAT TCAGCTCTAC
GCCCAGCAGC TGCAGCCAAT TCCGGATCCT GTACTAAGAA GTTTCTTAAT CGCTGAATTT
CCTGAATGTT TTAGCGGAGA CCTGATGGAT ACTTCCTGTT ATATAGTTAA ATACCGGGAT
GAACTGAATG TATCCAACAT GGGTATTTCT GATCTTTCCG GCATACAGTT TTTCACACAT
CTTACAACCT TGAAGTGCTC GAAAAATAAT CTGACAACAC TGGAGGATGT ACTTCCTGAT
TCCCTGCGGT TCCTGGATTG TGAATACAAT AAACTTACGC TCCTGCCTGC CCTGCCCCAT
GGATTAAATG TACTCCTGTG CTCCGGCAAC CAGCTTACAG CACTTCCCGC CTTACCTTCA
AAAATAGATG TTATTCATTG CTCCAACAAT CAACTCACAC AGTTACCGGC CTTCCCGAAT
AGCTTTTCTA CCCTTGCAGC GGATAGCAAT AAAATTGCTG TATTGCCCGC AATACCAGAC
TCCCTGTATT ATATAAGCAT CACAAATAAT GCGCTTACAG AGTTTCCGGC CGTTTCAGTC
GCTGCGAATA AAATATTTTA TATAAACGTT TCTGATAATA CGATTACAGC AGTACCTGCA
GTACCGCCTT CCTTACAATT CCTGCAAATA GCCAACAACC TTATTTCTGA ATTACCTGCT
CTCCCATCGG GACTGTTATC ATTAGGCTGT TCTAATAATC AGATCAGGTG CCTGCCCTAT
TTGCCAATGG GATTGAAGTG GCTGAGCTTT AGAGAAAATC CAATCACCTG CATGCCTAAT
ATGCCATCCG ATCTGATTTA CTTCAGCCCT TCAACTACCA CGATCTGTAC GGCTGAAAAC
ACCACACAGA ATAATTGCAC CTATTATACA CCAGCAAGAG GAATTGTGTT TGTAGACTAT
AATGGTAATA ACATACAGGA TCCGGGAGAT ACAGTGATAC AGGACATATT GATCTCTGCC
ACAAAACCGG ATGCACCCCA AACGCTTACA GATGCCATGG GAAGATTTAC CTTATATCTT
GCTCCCGGAA CATATGTTTA CCGCGCAAAT GTTTCAGATA CCCTGTTTAC GCTTTCAGCA
CTTCGGCTCA TTAAAATTGT TGACGGAGTA AGCAACGCCG CGTCCTATGA TTTTGGATTA
GTACCTACAA AAGAAATCAA AACCCTGGCT GTTACGATTA CTGCTTCTCC ACAACCAAGG
CCGGGGTTCC CTACAGGGTA TACCATCACC TGCATCAATA CCGGAAACTT TCCGGTAACA
AATGCAGAGC TGCGTTTTTC GTATGCACCT GAATTCGCCT ATGAATCTGC GTCCTTACCT
TACACCAGCC ACCAGGATAC GGTTATTACC TGGAATATTC CGGTACTGTA CCCGGGAGAG
AAAAAAAATA TTTCTGTTGC ATTTACCTTG CCGGCCTTTG TAGCACTTGG CACACCATTA
CCATCCAGCG CTGTGCTGAA GCCCATTAAT GCAGGCGACA CCACACGCAA CTACTGTTTT
TTACATAACG AAGCAAGAGG ATCGTATGAC CCGAATGACA AGAATGTTTT GCCGGAGGGT
ACGGTAACAC CCGTGTTCAT TAGCAACCAG GAAAACCTGG AGTACACGAT CCGTTTTCAA
AATACAGGCA ATGCAGATGC CATCAATGTA GTGGTAATGG ATACAATCAG CAGCAAACTT
GATATCGAAA CATTAACCAT GTTAAGTGCC AGCCACCCGT ACAGATATGA GCAGCGCGGC
AATAAAGCCA TATGGACATT TGAAAATATT CATTTACCAG ACATGCAGAC CAACGAACCT
GAAAGCCATG GCTATATTAA ATTTACCATC AAGCCAGTTA CAGATTTGGC ATTAGGAGAT
GCCATAACCA ACAGAGCAGG TATTCTGTTT GATTTTAATG AACCAATCAT TACAAATACA
ACACAAACAA TTGTAGCCGA GCCGCCGGTA GTAACAGGTA TTACCAGCAA AGCATCCCCT
GCAATGAAAC TGACTGTTTA TCCAAACCCT TGTACAGATA AGGTTACTAT AACATTCAAT
GAACACAGCT ATTCCGGTAA CGCGACTCTC CGCATATGGA ACAATTTAAA TCAGCAGGTA
ATAAATCAAT CTGTTGTTCT TAACAAAGGA ATGAATACAT TGGAAGCAGA TGTTCACCGT
TTACCTGCGG GCATGTATTA TATTGAAATA AGTTATAACG GAGCATCCCA TACCTCAAAA
CTCCTGAAAT AA
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| Protein sequence | MKKNTFFLLF VALFTTIQLY AQQLQPIPDP VLRSFLIAEF PECFSGDLMD TSCYIVKYRD
ELNVSNMGIS DLSGIQFFTH LTTLKCSKNN LTTLEDVLPD SLRFLDCEYN KLTLLPALPH
GLNVLLCSGN QLTALPALPS KIDVIHCSNN QLTQLPAFPN SFSTLAADSN KIAVLPAIPD
SLYYISITNN ALTEFPAVSV AANKIFYINV SDNTITAVPA VPPSLQFLQI ANNLISELPA
LPSGLLSLGC SNNQIRCLPY LPMGLKWLSF RENPITCMPN MPSDLIYFSP STTTICTAEN
TTQNNCTYYT PARGIVFVDY NGNNIQDPGD TVIQDILISA TKPDAPQTLT DAMGRFTLYL
APGTYVYRAN VSDTLFTLSA LRLIKIVDGV SNAASYDFGL VPTKEIKTLA VTITASPQPR
PGFPTGYTIT CINTGNFPVT NAELRFSYAP EFAYESASLP YTSHQDTVIT WNIPVLYPGE
KKNISVAFTL PAFVALGTPL PSSAVLKPIN AGDTTRNYCF LHNEARGSYD PNDKNVLPEG
TVTPVFISNQ ENLEYTIRFQ NTGNADAINV VVMDTISSKL DIETLTMLSA SHPYRYEQRG
NKAIWTFENI HLPDMQTNEP ESHGYIKFTI KPVTDLALGD AITNRAGILF DFNEPIITNT
TQTIVAEPPV VTGITSKASP AMKLTVYPNP CTDKVTITFN EHSYSGNATL RIWNNLNQQV
INQSVVLNKG MNTLEADVHR LPAGMYYIEI SYNGASHTSK LLK
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