Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2882 |
Symbol | yccZ |
ID | 4184473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 3295473 |
End bp | 3296216 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 638072872 |
Product | polysaccharide export protein |
Protein accession | YP_679471 |
Protein GI | 110639262 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0000309988 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0604046 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACGT ACTTCATCTA TCTGTATATA GTCGTTGTTG TACCTATGGT AACTTCTTGT GCAACGCAAA ATCTTTTTCA AAGTGATAAG CATTCAAATT TTATAAGTGA TTCAATACCT TCTTCAAGAG TTGAACATAT CTTAAAACAG GATGATAAAA TTACCATCAG CATATGGAAT CATGATGATT TAAGTGTGGG TTCCTTATTT GGAGTATATA ATTCAAATGA AGTATATGGA AAATGGATCA TTATTGATCA GAATGGTGAA GTAGATCTGC CTCAAATAGG CAAAGTAAAG TTAGATGGAT TAACAATAAA AAATGCTGAA GATTCTTTAC GCGCCAGGTA TGCAAAGTTA ATTGTAGACC CTGTAATCGT ATTGAAAGTT GTCAATATGG AAATTACTGT TTTGGGTGAA GTATTTAAGC CTGGTACGTA TACCATAGAT AAAGATTTTA ATACGGTAAT AGAACTTTTA GGCAAAGCCG GAGGACTGGA TTTCTATGCA AATAAAAAAC AAATACATGT AATACGAGGC GAAGGACCAA CTGCAAAAAA GTTTGTGCTG AATTTAACCA GTATGGAAGA ATACAAACAA AATAATTTAG TATTAGAATC TGGTGATGTA ATATTTGTAC CAATGCGAAA AGGAAAAATG ATTGATAAAA AAGCACCAAT CATTATTCCA TTTGCAAGTG CGCTGACCGC AACATTAGTA CTAATATCAT TTTTAACAAG ATAA
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Protein sequence | MKTYFIYLYI VVVVPMVTSC ATQNLFQSDK HSNFISDSIP SSRVEHILKQ DDKITISIWN HDDLSVGSLF GVYNSNEVYG KWIIIDQNGE VDLPQIGKVK LDGLTIKNAE DSLRARYAKL IVDPVIVLKV VNMEITVLGE VFKPGTYTID KDFNTVIELL GKAGGLDFYA NKKQIHVIRG EGPTAKKFVL NLTSMEEYKQ NNLVLESGDV IFVPMRKGKM IDKKAPIIIP FASALTATLV LISFLTR
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