| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2343 |
|---|
| Symbol | topA |
|---|
| ID | 4185133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 2704706 |
|---|
| End bp | 2707231 |
|---|
| Gene Length | 2526 bp |
|---|
| Protein Length | 841 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638072340 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_678943 |
|---|
| Protein GI | 110638734 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.767533 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAGA ATTTAGTCAT AGTTGAGTCC CCTGCAAAGG CAAAAACCAT TGAAGGGTAT
CTTGGAAAAG ATTTTACTGT TAAGTCGAGT TATGGTCACG TAAGAGACTT ACAGAAAGGC
GATAAGGCCA TCGATATAGC AAATAATTTT ACGCCTACGT ATGAGGTTTC TCCCGATAAA
AAAGATGTCG TAAAGGAATT AAAGAAGCTA GCCAAGGAAG CCGAAATGGT TTGGTTAGCA
ACCGATGATG ACCGCGAAGG AGAAGCTATT TCCTGGCATT TAAAAGAATC GCTGGATCTG
GATGATAAAA AAACAAGACG GATTGTATTC CGTGAGATTA CAAAAAATGC CATTTTAAAT
GCCGTACAAA CACCACGCGG TATAGATATT GACTTAGTAA ATGCACAGCA GGCACGCCGT
ATCCTTGACC GTCTTGTAGG CTTTGAAATG TCACCTGTGC TCTGGAAGAA AATCAAAGCT
GGTTTATCGG CTGGCCGGGT ACAATCTGTA GCCGTGCGTA TTGTAGTTGA CAGAGAGCGT
GAAGTGGACC AGTTCAATGC AACTGCTTTA TTTAAAGTAA CAGCAGAATT CAAAGATGGT
ACTAAAACGA TCAAAGCTGA ACTGCCGAAC CGTTTTGAAA CAGAAGCAGA AGCGCAGGCA
TTTTTAGATA AACTGGTTGG TGCGGATTTC TTTGTACGTG ACTTAGAAAA AAAGCCGGCG
AAAAAATCAC CTTCTGCCCC ATTCACTACC TCTACATTAC AGCAGGAAGC ATCGCGCAAG
CTTAGCTTCT CCGTGGCACA GACCATGACC GTTGCACAGC GTTTGTATGA AGCCGGTAAG
ATCTCTTATA TGAGAACGGA TTCGGTAAAC CTGTCGGACT TTGCCATTGA TGCCGCACGC
ACTACTATTA CAACTAACTA TGGTGGGGAA TACGCATTCA CCAGAAAATA TAAGAGTAAA
TCTGAAAATG CACAGGAGGC GCACGAAGCC ATCCGTCCGA CGGATTTCAA CGTACAGCAG
GCAAGTTCAG ACCGCAACGA ACAACGCTTG TATGATCTGA TCTGGAAACG TGCAATTGCT
TCTCAGATGG CAGATGCCAA ATTAGAACGT ACCGTTGTAA CAATCGGTAA TAATAAAGGA
CCGGAAAATT TTATTGCAAC CGGTGAAGTG ATCACCTTTG AAGGTTTCTT AAAAGTATAC
CTGGAGTCTA AAGACGAAGA GGATGAAGAC GAAGAAGAAA TCGAAGCAAA AACAGGTGGT
ACAGCAACTC TTCCTCCATT AACCGTTAAT CAGAAATTAG GTCTGAATCA GATCGTGGCG
GTAGAACGTT ATACACGACC GCCATCCCGA TATACAGAAG CAAGCCTTGT TAAGAAGCTT
GAAGAAATGG GGATCGGCCG GCCATCTACG TATGCGCCAA CGATCTCAAC CATTCAGAAA
AGAGGATACG TTATTAAAGA AGACCGCGAC GGCAGAGAGC GTAAGCTGAA ACAACTGACA
TTAAAAGATA ATGCGGTTAA AGCAGCTGTT ATCACTGAAA ATACCGGACA GGAAAAATCG
AAACTGTTTC CGACCGATCT TGCCATGATC ACCAATGATT TTCTTGTAGA ACATTTTCCG
CGTGTTACAG ACTTCAATTT TACCGCCATG GTAGAAAAAG AGTTTGATGA TATTGCTGAA
GGGAAGATCA AATGGCAAAG CATGCTGAAG GGCTTCTATG GCGACTTCCA TGAGCAGGTA
TTAAAGACAG AAAACATTGA CCGTTCTACC GTAAATACAT CCCGTATACT GGGTACACAC
CCTGAAACGG GCGAACAGAT CAGCACACGG CTGGGTCGGT ATGGTCCGTT TGTACAGATT
GGTGAAGCCG ACGAAGAAAA GGGCATCAAG CCGAAGTACG CGAGTTTACG CAAAGGACAA
CTGATTGAAA ACATTACGCT GGAAGAAGCG CTGGAATTAT TTAAACTTCC AAGAGAGCTT
GGTGCGTTTG AAGACAAACC AATGGTAGTA GCAATCGGCC GTTTCGGCCC ATATATCCGC
CACAACAGTA AGTTTGTTTC TATTCCGAAG ATTGATGATC CGATGACGAT TTCTGCGGAA
AGAGGCATTG AACTTATTCT TGCAAAACGT GTATCGGATG CAGAGAAGCT GATTCTTGAG
TTCCCGGAAA GTGAATATGT AAAAGTATTA AAAGGCAGAT GGGGCCCCTA TCTGGCAATT
GGTAAAAATA ATTTCAAATT ACCCAAAGAC AAAGAACCTG CAAGTTTAAC GTACGCGGAA
TGCCTTGCCA TTGCAGGCTT AGACCACGAC CCTACAGATG TGGACGCCGG TTTGGCAAAA
GCAAAGAAAG GTAAAGCAGC TGCAAAGAAA ACAACTACAG CTAAAAAAAC AGCAGTGAAG
AAAGCAGCGG TGAAGAAACC GGCAGCTAAA AAACCTGCGG CTAAAAAAGC AGTTGCGAAG
AAAGCGGCAG CTAAGAAACC CGCAGCTAAA AAAGCATCGG CTAAAAAAAC AACTGCTAAG
AAATAA
|
|---|
| Protein sequence | MPKNLVIVES PAKAKTIEGY LGKDFTVKSS YGHVRDLQKG DKAIDIANNF TPTYEVSPDK
KDVVKELKKL AKEAEMVWLA TDDDREGEAI SWHLKESLDL DDKKTRRIVF REITKNAILN
AVQTPRGIDI DLVNAQQARR ILDRLVGFEM SPVLWKKIKA GLSAGRVQSV AVRIVVDRER
EVDQFNATAL FKVTAEFKDG TKTIKAELPN RFETEAEAQA FLDKLVGADF FVRDLEKKPA
KKSPSAPFTT STLQQEASRK LSFSVAQTMT VAQRLYEAGK ISYMRTDSVN LSDFAIDAAR
TTITTNYGGE YAFTRKYKSK SENAQEAHEA IRPTDFNVQQ ASSDRNEQRL YDLIWKRAIA
SQMADAKLER TVVTIGNNKG PENFIATGEV ITFEGFLKVY LESKDEEDED EEEIEAKTGG
TATLPPLTVN QKLGLNQIVA VERYTRPPSR YTEASLVKKL EEMGIGRPST YAPTISTIQK
RGYVIKEDRD GRERKLKQLT LKDNAVKAAV ITENTGQEKS KLFPTDLAMI TNDFLVEHFP
RVTDFNFTAM VEKEFDDIAE GKIKWQSMLK GFYGDFHEQV LKTENIDRST VNTSRILGTH
PETGEQISTR LGRYGPFVQI GEADEEKGIK PKYASLRKGQ LIENITLEEA LELFKLPREL
GAFEDKPMVV AIGRFGPYIR HNSKFVSIPK IDDPMTISAE RGIELILAKR VSDAEKLILE
FPESEYVKVL KGRWGPYLAI GKNNFKLPKD KEPASLTYAE CLAIAGLDHD PTDVDAGLAK
AKKGKAAAKK TTTAKKTAVK KAAVKKPAAK KPAAKKAVAK KAAAKKPAAK KASAKKTTAK
K
|
|---|
| |