Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2185 |
Symbol | yiaD |
ID | 4183934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 2539368 |
End bp | 2541452 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638072186 |
Product | outer membrane protein |
Protein accession | YP_678790 |
Protein GI | 110638581 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.138653 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTATGCTC AAAGCCCTTC ACTATTTTTC TTTGATGATT TTGAGACAAC CTCTAAAGGA TGGTATGAAG GAGAAACAGA AAAATATTCT TTCAAAATTA CGAATGGCGG ATATCTCTGC ACGAATAAAT CGGTATCCGG AGAAACATTC TGGTCAACCA ATTCAACGTA CCTGAATCCC GATAAAGAAT TTACCTACCA GTTTAAAATA AAAGAGCTGG GTGGTTATGC CAGCGATGGT GCAGGTATTT ATTTAAGCGC AGGAAACAAT AAATACTTTT ATTTTGTCAT CAATCCGGAA CGGTTTGAAT ACGCGATTGC ATCCAGTGAA AATGGTAAAA ATACATTTCT GTATGAGTAT TACGGATCAA ACACCAACAA ACGTACAGCT GCCATTAAAC CCAGAAATGT AACGAATACG CTGGAAATTG CGCATAAAGG GAGTAACATA CTTTTCAGAT TGAACGATAC GGAATTATTA TCGATTCCGT ATGCAGGCTC AGGTTTTGAA TCACTCACAG GCGTATTCGG AATTTTTATG CGTACAAATA TGACTGTAGT TGTTGAAGAG GCAAGCTTAT ACCACGATGT GCAGATCAAA ACGGTACCAA ACTTAACGAA CGGAATAAAA CGCGAAAACC TGGGTGCAAA CATCAACACA ATCTATGCTG AAAAATTACC GTACATTGCT GCAGATGGTA AAACGCTTTA TTATTCCATA CAGGGAAACC CTGCTAATAC AGGTGGTACA ATGGATGGTG ATGAAATCTA TGTAGCAACA GCTGCCGCTG AGGGTAACTG GAACAAATCA ACAGCCATTG GCAAACCGTT AAATAATGCC GGCCCAAATG CTGTTATTTC TGTAACTCCC GATAACAACA GTATGCTGAT TATGAATCAA TATAATGCAG ATGGTACACA AAAAGGATCC GGTGTTTCAT TTTCATACCG CACGGAATCG GGCTGGTCGG TGCCGGCAGA TGTTGTGATC AATAATTTTT ATAACCGTGC AAATACAAAT GAATACTCCC TGTCTGCAGA TCGCAAAGTT TTATTCATGA CGTTACAGCG CGATGACAGC AAAGGTGATA AAGATGTTTA TGTGAGTTTT TTACAAAAAG ACGGCAGCTT CAGCACACCT TTAAATCTTG GGAGCCAGGT AAACACAAGC AAAGGAGAAC TGACTCCTTT TATTGCTGCA GACGGTGTAA CACTTTACTT TGCAACATAC GGCCACCCTA CCTACGGCAG CGCCGATATT TATATGACAC GCCGTTTGGA TTCAACGTAT ACAAATTGGT CTGAGCCTTT GAACCTCGGA CCAGAGATCA ACTCAACAGC CTGGGATGCC TATTATTCAG TAGAGGCTTC GGGTAAATAT GCCTACATGG TTACAGCAGA AAACTCCATT GGCGATATTG ATATTGTGCG CATTGCCTTG CCGCAATCTG CAAAACCGAA ACCTGTTGTG CTGGTGTATG GCAAAGTATT ACATGCTACT ACAAAACTAC CGTTGAAAGC AAACATTCAA TATGTAGATC TGGCAACAGG GAAAGAAATT GGTATAGCAA CCAGCGATCC TAAAACAGGT GAATACAAAA TTGTTTTGCC AACAGGTGCA AACTATGGTT TCCTGGCACA GAAAGAAAAC TTTTTCTCCG TATCAGACAA CATGGATCTG AATGACCTGA AAGAATATAA GGAACTGGAA CGTAATTTAT ATTTAGCGCC CCTTATAACA GGACAAACCA TCCGTTTGAA TAATTTGTTT TTTGATACCG GAAAAAGTGA TCTGCGCAAA GAGTCTTATG CCGAATTAAA CCGTACGGTA GAATTAATGA AATTATACCT GACCATGACG ATAGAAATTT CCGGCCATAC CGACAACGTT GGCGGCGATG CAGAAAATCA AACGCTCTCT GAAAACAGAG CAAAAGCAGT TGTAAATTAT CTGGTTTCTC ACGGCATCGA TGCATCCCGT GTGCAATCTA AAGGATATGG AAAAACTAAA CCTGTCTCTA CAAACGATAC AGACCACGGC CGTCAGCTGA ACAGACGCGT TGATTTTACG ATTATAAAAA TGTAA
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Protein sequence | MYAQSPSLFF FDDFETTSKG WYEGETEKYS FKITNGGYLC TNKSVSGETF WSTNSTYLNP DKEFTYQFKI KELGGYASDG AGIYLSAGNN KYFYFVINPE RFEYAIASSE NGKNTFLYEY YGSNTNKRTA AIKPRNVTNT LEIAHKGSNI LFRLNDTELL SIPYAGSGFE SLTGVFGIFM RTNMTVVVEE ASLYHDVQIK TVPNLTNGIK RENLGANINT IYAEKLPYIA ADGKTLYYSI QGNPANTGGT MDGDEIYVAT AAAEGNWNKS TAIGKPLNNA GPNAVISVTP DNNSMLIMNQ YNADGTQKGS GVSFSYRTES GWSVPADVVI NNFYNRANTN EYSLSADRKV LFMTLQRDDS KGDKDVYVSF LQKDGSFSTP LNLGSQVNTS KGELTPFIAA DGVTLYFATY GHPTYGSADI YMTRRLDSTY TNWSEPLNLG PEINSTAWDA YYSVEASGKY AYMVTAENSI GDIDIVRIAL PQSAKPKPVV LVYGKVLHAT TKLPLKANIQ YVDLATGKEI GIATSDPKTG EYKIVLPTGA NYGFLAQKEN FFSVSDNMDL NDLKEYKELE RNLYLAPLIT GQTIRLNNLF FDTGKSDLRK ESYAELNRTV ELMKLYLTMT IEISGHTDNV GGDAENQTLS ENRAKAVVNY LVSHGIDASR VQSKGYGKTK PVSTNDTDHG RQLNRRVDFT IIKM
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