| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2105 |
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| Symbol | xynT |
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| ID | 4186311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2449883 |
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| End bp | 2451907 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638072105 |
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| Product | xylanase |
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| Protein accession | YP_678710 |
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| Protein GI | 110638501 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATA TAGGTAAGTT ACTATTTCTT TTTTTAGTGT GTCACGTTCA GTTACATGCT
CAAAATTTAC TTTCCAATCC GGGCTTTGAA ACCGGCTCGG CAAATCCATT TCAGTTATGG
GTATCTCCGG TTACAGGATA TGCGGCAACC ATGAGTGTTT CTTCAACCAA TCCACACGCC
GGTACAAAAT CACTGCTGAT GGATGTTACG CAGTCAGACC CCTCCAATAC AAATTATTAC
GATAAGATCT GGCGTGTGCA GTGCACACAA AGTGGATTTT CGACAATCGC CGGACAAAAA
CTATTATTTT CTTTCTGGGC CCGTGCAGAT GCACCACATC CGGTGCAGTT TGGTATTACT
AAAAACAGTG AGCCATACAA TGACTTTTCA ATGGAAGAAG TGGATCTCAC TACGGAATGG
AAAAAATATG AAATGGTATT TATAAGCCCC GTTACGGGTA ATGATATCCG CATGATGTTT
CGGTGCGGAA GTGCAGAAGG AAAATATTTT TTAGACGATA TTTCATTAAC CAGTCAGGGG
ATGTCGGATC ACAGCTGGTA CGCGCAGGCA GATACCCGAA TTGAGCAAAT ACGTAAAGGC
GATTTTGTAT TAACGGTTAA AGATCAGAAT GGAAATATCC TGAAAAATTG TGACGTTACC
GTTAATCTGA AACAGCACGA TTTTAAATGG GGAACCGCCT TGGCCTTTCA GCAGAATAGT
ACGGAAGATG AAGTCTGGTA CCGCAATACG GCGAGTAACT ATTTCAATAA TGCGGTTTTT
GAAAATGATT TTAAATGGCC ATCCATGGAA TATGTTAATG GTGATGTAAC TTATTCAAAC
CTTGAGCGAT ACCTGGATTG GGGCAATGAT CAGCATATTG ACTTCAGAGG GCATACACTG
GTATGGGGCG GGAAGCAGGC TTCGCCACCC AATTCATATT GGTTAACACC TTCCTGGTTG
TGGGATGTCT CTTCCGATTC TGCTTATAAA TTAATCGAAA GACGTATCAA ACGTGATCTT
ACTTATTTTA AGGGACGCAT ACATGAATAT GATGTTGTAA ACGAGCCCGT GCATGAAAAA
GCACTGGCAG GCTGGCTTGG AGACAGCGTG CATGTAATGG CCTTCAAATG GGCCAAACAG
GCAGACCCGA CTGCAACGTT ATATATCAAC GATTATGCAA ACATTGACGG TGCTACAACA
TCTAAATACA GATCCTATAT TTCATACCTG CTAAGTAAAG GCGCTCCGGT TGAAGGCATT
GGTGTACAAG GCCATTTCGG ATCGCGGATT GATTGGGCCA GTGTAAAACT ACGGCTGGAT
TATCTGGCTG AAATGGGCTT GCCGATTAAA ATTACAGAAT TTGATATGAA TCAGAATACT
TTAAACCTGA CCGAAGCAGA ACAGGCAAGT GAATATTCTA AAATGATGCG TATTGCGTTT
TCACATCCGG GAGTAGAAGG ATTTTTATTC TGGGGATTCT GGGATAACCG CCATTGGATC
CCGGGTGCAG GGCTTTTCAA GGCAGATAAA ACACCTAAAC CAGCAGCAGA TTCGGTATAT
AAACTGATCC ATACAACCTG GTCGACAACG GCTCATGTAA CAACAGATCA AAATGGTCAG
GTAGGTTTCA GAGGGTATTA CGGCAGCTAT GAAGTGTTAA GTACCTGTGG CAACGCTCTT
GCGGGACAAA CAGTATTTAC TAAAAATACA CTTTCCAATA CTGTTACATT AGATTATGCA
GTTACTGCTG TTAACGGCCG TGTAGAGAAC AGGCAATTGC TGGTATTTCC GAATCCTGCA
ACGCAGCGTG TACGTGTTAC AGTGCCTTAC AATGAACCTG TAGCTCACGT TGATTATGTA
CTGATCAATG CAACAGGCCA GACGGTTTCA CAGCAACTGC GGGTCCCGCT TCAAACGCAA
ACAGATTTTG ATATTGATAT TCAAACATTT AATGCAGGTA TATATAATCT GATTGTAAAT
AGTAATGGTA AAACATATTA TTCAACCGTG ATAAAACCGG AATAA
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| Protein sequence | MKHIGKLLFL FLVCHVQLHA QNLLSNPGFE TGSANPFQLW VSPVTGYAAT MSVSSTNPHA
GTKSLLMDVT QSDPSNTNYY DKIWRVQCTQ SGFSTIAGQK LLFSFWARAD APHPVQFGIT
KNSEPYNDFS MEEVDLTTEW KKYEMVFISP VTGNDIRMMF RCGSAEGKYF LDDISLTSQG
MSDHSWYAQA DTRIEQIRKG DFVLTVKDQN GNILKNCDVT VNLKQHDFKW GTALAFQQNS
TEDEVWYRNT ASNYFNNAVF ENDFKWPSME YVNGDVTYSN LERYLDWGND QHIDFRGHTL
VWGGKQASPP NSYWLTPSWL WDVSSDSAYK LIERRIKRDL TYFKGRIHEY DVVNEPVHEK
ALAGWLGDSV HVMAFKWAKQ ADPTATLYIN DYANIDGATT SKYRSYISYL LSKGAPVEGI
GVQGHFGSRI DWASVKLRLD YLAEMGLPIK ITEFDMNQNT LNLTEAEQAS EYSKMMRIAF
SHPGVEGFLF WGFWDNRHWI PGAGLFKADK TPKPAADSVY KLIHTTWSTT AHVTTDQNGQ
VGFRGYYGSY EVLSTCGNAL AGQTVFTKNT LSNTVTLDYA VTAVNGRVEN RQLLVFPNPA
TQRVRVTVPY NEPVAHVDYV LINATGQTVS QQLRVPLQTQ TDFDIDIQTF NAGIYNLIVN
SNGKTYYSTV IKPE
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