| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1954 |
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| Symbol | nlpC |
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| ID | 4186443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2281204 |
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| End bp | 2281983 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638071957 |
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| Product | lipoprotein; cell wall-associated hydrolase |
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| Protein accession | YP_678562 |
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| Protein GI | 110638353 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.370488 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0479966 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACAAT ACGGAATTTG CCATTTGAGT GTAGTACCCA TGCGGGTTGA AGCAGGTGAT
CGTCATGAGA TGAGTTCACA ATTATTGTTC GGAGACTTTT TTGAAATTGT GAATCAGTCT
GAAGATGGTA AATGGAAATA CATTCAAAAT GATTTTGACG GCTATAAAGG CTGGATAGAT
GCAAAACAAT ACCTTCCGGT AGACGAAGAA TATATTCATA AATTAAGTCA GACACCACCG
GTATTTTGTA AATCATTATA TGCACTTGCT AAAAGTGAAA CGCGTTTCTT TCCTTTGTTG
ATGGGCTCTA CCTTGCCTTT ATATAAAAAC GGAATCATCA GTGTAGGAGA TGAACCGTTT
ATTTTAGAAG GCGATGTTGG TTATGCTGAG CCCTTCAATG CAAAGAAGCT GGAACAGACG
GCTATGCTGT ATTTAGGTGC GCCGTATCTG TGGGGCGGCC GTTGTCATTT CGGGATCGAC
TGTTCGGGCT TTGTACAACA GATCTACCGC ATGTATTCCA TTCCCTTACC AAGAGATGCG
TATCAGCAGG CAGAGATCGG GATCACTGTG CCGTATGAAC ATTACCAGCA GGGCGATCTG
GCATTCTTCA AAAATGAATT TGACAAGATC ACACACGTAG GCATCATGCT TAACGGCAAT
AAGATCATTC ATGCATCCGG ACAGGTCCGC CTGGATCTGA TCGATGAGCA GGGGATTGTA
CATGCCGAAA AGCGTATCTA CACGCACCGG CTGGCGTTTA TCAAGCGGGC AGGAGTGTAG
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| Protein sequence | MKQYGICHLS VVPMRVEAGD RHEMSSQLLF GDFFEIVNQS EDGKWKYIQN DFDGYKGWID
AKQYLPVDEE YIHKLSQTPP VFCKSLYALA KSETRFFPLL MGSTLPLYKN GIISVGDEPF
ILEGDVGYAE PFNAKKLEQT AMLYLGAPYL WGGRCHFGID CSGFVQQIYR MYSIPLPRDA
YQQAEIGITV PYEHYQQGDL AFFKNEFDKI THVGIMLNGN KIIHASGQVR LDLIDEQGIV
HAEKRIYTHR LAFIKRAGV
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