| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1886 |
|---|
| Symbol | ymdC |
|---|
| ID | 4186762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 2204030 |
|---|
| End bp | 2205562 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638071884 |
|---|
| Product | cardiolipin synthase |
|---|
| Protein accession | YP_678494 |
|---|
| Protein GI | 110638285 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.115754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00782832 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAT ATAGTACACT TTTTTTTAGT ATGTTATTTT TATGCTCCTG TTCGGAATCT
TCCAAAGAAA TTCCGGTGCA GGAAAAAGAT TTTTGCGCAT CTATTCACCG CAATGATTCG
CTAAGTCTTA CACATGAGCT GGAACCTTTC ATAGATTCCA TGAAAAATAA AACAGGTGTT
TATGTACTTG AAGATGGCGG CGGCTCGCTG ATCACACGCG CCTGGCTGAG TGAGTATGCA
GAAGAAACAA TCGACATTCA GTATTTTATT TTTTCAGCAG ATAATGTGGG GCTTATTGCC
TGTGATTATC TGGTACGTGC GGCAGACCGT GGTGTAAAAG TACGCATCCT GATCGATGAT
ATATTGGTTG AAGCCGGCGT ACATGAAATA CTCACGCTTG ACTCGCATGA AAATATTGAA
ATTAAAATTT ATAATCCCGG TATCAATCTG GGTAAAAATA TATTTAATAA GATCGGGAAA
TTCACGACCG ATTTTCGAGG CGCAAATCAG CGCATGCACA ACAAAACGTT TATTGTTGAT
CACAAAGTCG TGATTACAGG TGGCAGAAAT ATTGCCGATG AATATTTTGA TTACGACCAC
GAATATAATT TCAGGGACAG GGATGTATTA CTGATAGGTA AAACAGCAAC GGATGTACAA
CAATCGTTTG AGTCATTCTG GGTTGACGCG CTGAGTATTC CGATCACAGG ACTGGTGAAG
GAGGATGATG TAACCTATAC CGATACAAGT CGTTTTGAAC GCCTGCATCA ATATGCCTGT
AACCCGGATA ATTTCTGGCC GCAGGTACGG AAGCGCATTT CAAATCTTAC CGAAACATTT
CAGGTAATGA GAGATTCGGG CAGGTTAAAA TGGGTAGAGC ATGTGCAGTT TGTTTCCGAT
GCACCGGGCA AAAATGATGG CAAACAGGGA CTTGGCGGCG GCGGTGTATG CACCGACAGT
CTGATTAGTC TTATAAAACG TGCAACAACA TCCATTGATA TTCAATCACC TTATTTAATC
ACAACGGAAG TTGGCCGAAC GTTATTTAAA GCTGCGGTTG ACCGGGGCGT ACGCATTCGT
ATTTTAACAA ACAGTCTTGC TTCTACCGAT AACCTCGAAG CGTTTAACGG TTATCAGCGC
GACAGAAAAA AATTACTTGC AACAGGGGTT GAGATCTATG AATTCAGACC TGATGCTGCG
GTGCGTTACC AGATCATGAC CGGAGCATTG CAGGAAAAAA TGCAGTATAC ACCCATTTTC
GGTTTGCATG CAAAGTCGAT GGTGATTGAT GGTACCATTG CTGTTATAGG TACATTTAAC
CTGGATCCGC GCAGTGCCAA TCTGAATACA GAATGTGTAA CCATTATCTA CTCAAAAGAG
GTTGCAGCAG GAGTGCTTGC AGGAATGGAA ACTGAAATCA AACCGGAAAA TGCCTGGCAT
ACGACAACTG TATTCAATCC GGATGGTGAA GCCGGAGCAA AGAAGCAAGC TAAAGCGTGG
ACACGCAGAG TGGTGCCGAA AGGAATTTTA TAA
|
|---|
| Protein sequence | MIKYSTLFFS MLFLCSCSES SKEIPVQEKD FCASIHRNDS LSLTHELEPF IDSMKNKTGV
YVLEDGGGSL ITRAWLSEYA EETIDIQYFI FSADNVGLIA CDYLVRAADR GVKVRILIDD
ILVEAGVHEI LTLDSHENIE IKIYNPGINL GKNIFNKIGK FTTDFRGANQ RMHNKTFIVD
HKVVITGGRN IADEYFDYDH EYNFRDRDVL LIGKTATDVQ QSFESFWVDA LSIPITGLVK
EDDVTYTDTS RFERLHQYAC NPDNFWPQVR KRISNLTETF QVMRDSGRLK WVEHVQFVSD
APGKNDGKQG LGGGGVCTDS LISLIKRATT SIDIQSPYLI TTEVGRTLFK AAVDRGVRIR
ILTNSLASTD NLEAFNGYQR DRKKLLATGV EIYEFRPDAA VRYQIMTGAL QEKMQYTPIF
GLHAKSMVID GTIAVIGTFN LDPRSANLNT ECVTIIYSKE VAAGVLAGME TEIKPENAWH
TTTVFNPDGE AGAKKQAKAW TRRVVPKGIL
|
|---|
| |