| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1599 |
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| Symbol | ydgR |
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| ID | 4185181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1874077 |
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| End bp | 1875645 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638071592 |
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| Product | oligopeptide transporter |
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| Protein accession | YP_678209 |
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| Protein GI | 110638002 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.941268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.632798 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATCAG GTATTCCGTT TATTGTGGGT AACGAAGCCG CAGAGCGTTT CAGCTTTTAT
GGCATGAGAG CTATTCTTGC TGTTTTTATG ACCAGTTATT TACACATGAC TGAAAGTACG
GCAACAGAAT GGGCACATAC ATTTAATTCA GCTGTTTACT TCACGCCTAT TTTAGGCGCA
TTTTTAGCTG ATATTTTTAT CGGTAAATAC CGAACCATCT TATATCTCTC TGTTCTATAT
TGTTTTGGCC ACCTGGTTTT AGCACTGAAT GAATCTAAAG ACGGATTGTT TTGGGGATTA
ACCTTGATTT CCATTGGCGC AGGTGGTATT AAGCCTTGTG TGTCCGCGCA CGTTGGTGAT
CAGTTTGGCA TTAAAAATAA ACACCTGATT GAGCGGGTAT TTTCGATCTT TTATTTTGCC
GTTAACTTCG GATCTCTTTT CAGCACGTTG CTGATCCCTT ATTTGCTGGA ACATTACGGT
CCTGCTTATG CCTTTGGATT ACCCGGTATA TTAATGTTTG TTGCTACTTT TATATTTTGG
TCTGGCAGAA ATAAATTTGT TCATGTACCT CCCTTCGGTA AAGCCTATTT TAAAACAGTT
TTTGGTAAAG AAGGTTTATC TGCCATCGGC AGACTCATAT TTATATACGC ATTTATTGCA
ATCTTCTGGG CGCTCTATGA TCAGCATGCA AGTACGTGGG TATATCAATC TAAAAGTGCT
TTCTTAAATA AAGATATTAA TCTGTTTGGC CTTGTAGAGT TTACGCTTCT GCCTTCTCAG
ATACAAGCAG CCAATCCAGT CCTGGTTCTG GTTCTGATAC CAGCTTTTGC GTTTTTTATC
TATCCGGCGC TTAACAAAAT CATTACACTA AAGCCTTTAA TCAAGATTTT GCTGGGCATG
TTTATGTGTG TGCTTGCCTT CCTGGTAGCA GCGTACATTG AAAAGCGGAT TTCCAGCGGC
ATTGAAACAA GTGTGTGGTG GCAGTTCCTT GCTTATTTAA TTTTAACTAT GGCAGAAGTG
ATGGTTTCTA TTACAGCACT GGAGTTTTCC TATACACAGG CACCCAATCA AATGAAATCA
ACAGTAATGG GTATTTTCAT GTTTTCCATT TCACTTGGTA ATATATTGGT AGCCGTTATT
TCAAATTACA ACAACCTGCA TGAAGAAGTT AAAACGGTTG AAATTGGCAC AAAAACATAT
ATATCCATAA AAGATTATAC ACCGGTTAAA GGAGAAAAAA TAGAATTCGA AGACGGAACA
GGCTTATTCA TTCTTCAGCA GAATTCAAAG ACTTCGCTTA TGGATACAAT TCCGCTCGGT
GGAACCTACC TGGTTGGCGA TGTTGATGCT GTTTCCAACC GATTTACGCT TGAAGATAAT
GGCTGGCATG CTATTCAAAC CATAAAAAAA TCTGAATTGC CTAAAGGCTA TAAAGTAGTC
TTTCATCGGT TTAAGCACCA ATCCTACTTC TATATGTACG CGCTGCTTAT GTTTGTAACA
GCGGTTCTGT TTATTGGCGT AGCGCTCAAA TACAAAGGTA AAACGTACAT TCAGGGAGAG
GCTGTATAA
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| Protein sequence | MPSGIPFIVG NEAAERFSFY GMRAILAVFM TSYLHMTEST ATEWAHTFNS AVYFTPILGA
FLADIFIGKY RTILYLSVLY CFGHLVLALN ESKDGLFWGL TLISIGAGGI KPCVSAHVGD
QFGIKNKHLI ERVFSIFYFA VNFGSLFSTL LIPYLLEHYG PAYAFGLPGI LMFVATFIFW
SGRNKFVHVP PFGKAYFKTV FGKEGLSAIG RLIFIYAFIA IFWALYDQHA STWVYQSKSA
FLNKDINLFG LVEFTLLPSQ IQAANPVLVL VLIPAFAFFI YPALNKIITL KPLIKILLGM
FMCVLAFLVA AYIEKRISSG IETSVWWQFL AYLILTMAEV MVSITALEFS YTQAPNQMKS
TVMGIFMFSI SLGNILVAVI SNYNNLHEEV KTVEIGTKTY ISIKDYTPVK GEKIEFEDGT
GLFILQQNSK TSLMDTIPLG GTYLVGDVDA VSNRFTLEDN GWHAIQTIKK SELPKGYKVV
FHRFKHQSYF YMYALLMFVT AVLFIGVALK YKGKTYIQGE AV
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