| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1238 |
|---|
| Symbol | |
|---|
| ID | 4187028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 1434420 |
|---|
| End bp | 1438247 |
|---|
| Gene Length | 3828 bp |
|---|
| Protein Length | 1275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638071232 |
|---|
| Product | beta-xylosidase/endoglucanase |
|---|
| Protein accession | YP_677850 |
|---|
| Protein GI | 110637643 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA AAAGACAAAT CAAGAACAGT ATCCTTTTGT TTATACTGAA TCTGTTTGCC
GCCACTTCAT TTGCTCAGAT ACCGCTGGTG TATGAAGTAG AGAATACCGG TGCATCCTGT
ACTGCGCCTC CCTTACCGGC TGTGGCTCAG TTACCTTCCT ATGCCATGCT GCCGGATCCT
TTTGCCTGGT CAAACGGCAG CGGCAGAATT GCTAGCTTTG CTGACTGGTC GTGCAGAAGA
AATGAGATCA AACGTGAAAT TGAACAATAC GAGATTGGTG TGAAACCGCC GAAACCCGCT
AATATAACGG CTACTTATAC CGGAGGTGTA CTTACTGTGC GTGTTACTGA AAATGGCAAA
ACGCTTACGC TTACATCAAA CGTTACTATG CCAACCGGCA CGGGACCTTT CCCTGTAGTG
ATCGGGATGA ATGCCCGCAC CGGACAGCTT CCGACAAATT TATTCAATGG TGTTATACAA
ATACCATTCA ACCACGATCA GGTTGCGAAA TATACACAAG GGGACAGAGA TCCATCGTAT
CCGTTCTTTC AGCTTTATCC CAACCTTACC AGTAACGGAT ATTACAGTGC ATGGGCATGG
GGCATAAGCC GTTTGATTGA TGGTATTGAA CTTGTGCAGG CACAACTGAA TGCCGATACA
AAACGGATTG CTGTAACAGG CTGTTCCTAT GCCGGTAAAA TGGCGCTGTT TGCAGGTGCG
TTCGATGAAC GTATTGCCTT AACAATCGCA CAGGAGTCCG GCGGCGGCGG TGTTAATGCG
TGGCGTGTAT CCGAGACGAT TGGAAACGTA GAAAAAATAA GCAATACCAA TTATGCCTGG
TTTATGCAAA GCCTGAAAAC AAACTTTCAG AATGGCAATG CAGTAAAACT TCCGTATGAT
CACCATGAAT TAATGGCAAT GATTGCACCT CGTGCTTTAT TAGTATTGGG GAATCCGCCT
TTTGAATGGC TGGGAGATGA ATCGGGTTAT GTGTCGAGCA GAGCTGCTCA GGAAGTATGG
ACAACGCTTG GCGTGCCTGA ACGGTTTGGA TTTTCTTTCC GTGGCGGCCA CGATCACTGC
TCGCTGCCAA GTGCATCAAA CGCAGAGGTT ACAGCCTTTG TAGATAAATT CCTTCGGAAT
AGTACAACAG CGAATACCAA TATTGCGGTA CATTCTTTTC CCAATACCGA TTATAATAAA
TGGATTGCCG CATGGAAAGG ATATGTACTG CCTCCGGTAA ATACTAATTC GCCGGCCGTT
ACGGTTACAG CTCCGGCAAC AAATGCTTCT TACGCCGAAG GTGAACCGAT AACAATCACT
GCAACGGCAA CACCAAAAAC AGGGACGATC ACGCAGGTAG AATTTTATCA GGGTACTACA
CTATTAGGAA CGGATGCAGC CGCACCTTAT ACATTTACAT GGGCCAATGC ACCCGCAGGA
AAATATCAGA TCACGGCAAA AGCCACTACT TCTGCCAGTC ATGCAGGTAC TTCCGCTGCG
ATAACCGTTC TTGTAACCAA AGCCATTTTC CAGACAGGTA CAGCGCCAGC CATTGACGGC
ACAGTAGATG CTGCATGGAG CAATTATACG GCTGTTCCGA TCACAAATAT ATTGAGCGGT
ACGGTAAGTT CTGCCGCAGA TCTTTCCGGT AACTGGAAAG CGATGTGGGA TGCAACGAAT
TTGTATGTGC TTGTGCAGGT AACAGACGAC GTGAAACGCA ACGATGCCGG TACAGATGTA
TACAACGATG ATGGGGTTGA AATCTATTTT GATTTTGGGA ACAATAAACC AATGGCGTAT
GGCGCAAACG ATCATCAGTA TACGTTCCGC TGGAATGATG CTACCGCAGC GTATGAAATA
AACGGACATT CCGTTGCCGG TATTACTAAA GGGAGCACCA ATACAACGGG TGGATATATT
ATGGAAGTAC GTATTCCATG GGTAACAATC GGCGGTGTAC CAGCAGCAAA CAGCCTGCAC
GGTTTTGATG TTATGATCAA CGACGATGAT AATGGTGCAG CCCGGGATAA AAAAATAGCC
TGGACAGCTA CGGCAGATGA TACCTGGAAC AATCCATCGC TGATGGGTAC AATTGTTCTG
AAAGGGCTGG ATTGTACGCC TCCGGCAGCA ACGATTACAG CAACAGGTGC AACAACTGTA
TGCAGCGGTA CTTCTGTAAC ACTGAATGCA AATGCGGGAA CAGGTTTTAC TTATATATGG
AAAAAAGATG ATACAGTTAT CGCCGGAGCA ACTGCCGCTT CATATGCCGC AACCACTTCC
GGTTCCTATA CGGTAACGGT TACATCCGGT GCATGTGCGG CAACATCCAC CGCAACGTTA
GTAACGGTAA ATACAGCACC TGCCGCACCT ACAGTTGCCG CAACCGTTGC GTATTGCCAG
AATGAAACAG CAGCGGTATT AACGGCAACA GGTACCGGAT TGAAATGGTA TACAGCAGCA
ACGGGTGGTA CATCAACAAA TGCACTGACA CCGGAAACCG GAACTGCAGG TTCAAGGAAC
TATTATGTAT CACAGACAAC AAACGGCTGT GAAAGTGCAC GGGCAGTAAT TGCGGTAACC
ATACATGCAC TGCCGGCAGC AACGATCACA GCAGGTTCAC CGACAACATT TTGTACAGGC
GGCTCTGTAC TGCTTACAGC CAGCACAGGT ACTTCCTATG TCTGGAAAAG AGGTGCAACA
CTGGTTGGTA CGGCTGCAAC ATATACAGCT GCTGAATCCG GTTCATACAC GGTTGAAGTT
ACCAATGTCG CTACCTGCAA AGCAGTATCA ACGGCAACAG CAGTAACAGT AACCACCGCA
CCTGCCGCAC CTGCAGTTGC TGCAACCGTT GCATATTGTC AGAATGAAAC AGCAGCGGTA
TTAACGGCAG CAGGAAGCGG ATTGAAATGG TATACAGCAG CAACGGGTGG TACATCAGCT
GCTGCACTAA TACCGGAAAC AGGAACTGCA GGCTCAAGGA ACTATTATGT ATCACAGACA
ACAAACGGCT GTGAAAGTGC GCGCGCAGTA ATTGCGGTAA CCATACATAC CTTACCTGCA
GCAACGATCA CGGCATCCGG TTCTACAGCC ATTTTACCGG GCGGCAGCGT ATTGTTGAAT
GCAAACACGG GTACCGGTTT CGCCTATAAA TGGTTTAGAG GTACAACTCA GTTAAGTATA
GCTTCAGCAT ACGAAGCTAA TACAGCAGGT GCTTATACCG TAGAGGTTAC GAATGCAAAC
GACTGTAAAG CTGTATCTGC AGCAACGATT GTAACGTCAG CAACGAATCA GCCTTCGGTT
ATTACGATTA CCTCTCCATT GCCTGATGCA ACGATTAAAG GTGCAATAAC TATTTCGGCA
GACATTTCAG ACGCAGATGG TGCTATTACA CGTGTCGAGT TTCTGGATGG TACTACTGTG
ATCGGTACAG CTGCAGCAGC GCCGTATACA TTTGTCTGGA ATACGCCGGG CGCAGGAGAA
CATTCTATAA CGGTTCGGGT TACGGATCAA AATGGCGGTG TAACAACTTC AGCACCGGTA
ACAATAACTT CTGAACAAAT TACTACTGCT GTACAATCTG CCAATAGCAT TCAGGCTTTT
GTATATCCGA ATCCTTCTGC CGGAGAAGTG TTTATTGAAA CGGAAACCGA TCTTTCAACG
GCTGATTTTA CGGTGGTTGA TGTATTGGGT AAAGAAGTAT CCTTATCGGC CATGGTTACA
GGAAATGGCG CAACGGTTGA TCTGAGTAAT TTAAGTGTAG GGACTTATGT ATTACTTGTG
AGAGACGGGA ATTCCATTTT AAGAAAAAAA ATAACACTTA TAAAATAA
|
|---|
| Protein sequence | MKIKRQIKNS ILLFILNLFA ATSFAQIPLV YEVENTGASC TAPPLPAVAQ LPSYAMLPDP
FAWSNGSGRI ASFADWSCRR NEIKREIEQY EIGVKPPKPA NITATYTGGV LTVRVTENGK
TLTLTSNVTM PTGTGPFPVV IGMNARTGQL PTNLFNGVIQ IPFNHDQVAK YTQGDRDPSY
PFFQLYPNLT SNGYYSAWAW GISRLIDGIE LVQAQLNADT KRIAVTGCSY AGKMALFAGA
FDERIALTIA QESGGGGVNA WRVSETIGNV EKISNTNYAW FMQSLKTNFQ NGNAVKLPYD
HHELMAMIAP RALLVLGNPP FEWLGDESGY VSSRAAQEVW TTLGVPERFG FSFRGGHDHC
SLPSASNAEV TAFVDKFLRN STTANTNIAV HSFPNTDYNK WIAAWKGYVL PPVNTNSPAV
TVTAPATNAS YAEGEPITIT ATATPKTGTI TQVEFYQGTT LLGTDAAAPY TFTWANAPAG
KYQITAKATT SASHAGTSAA ITVLVTKAIF QTGTAPAIDG TVDAAWSNYT AVPITNILSG
TVSSAADLSG NWKAMWDATN LYVLVQVTDD VKRNDAGTDV YNDDGVEIYF DFGNNKPMAY
GANDHQYTFR WNDATAAYEI NGHSVAGITK GSTNTTGGYI MEVRIPWVTI GGVPAANSLH
GFDVMINDDD NGAARDKKIA WTATADDTWN NPSLMGTIVL KGLDCTPPAA TITATGATTV
CSGTSVTLNA NAGTGFTYIW KKDDTVIAGA TAASYAATTS GSYTVTVTSG ACAATSTATL
VTVNTAPAAP TVAATVAYCQ NETAAVLTAT GTGLKWYTAA TGGTSTNALT PETGTAGSRN
YYVSQTTNGC ESARAVIAVT IHALPAATIT AGSPTTFCTG GSVLLTASTG TSYVWKRGAT
LVGTAATYTA AESGSYTVEV TNVATCKAVS TATAVTVTTA PAAPAVAATV AYCQNETAAV
LTAAGSGLKW YTAATGGTSA AALIPETGTA GSRNYYVSQT TNGCESARAV IAVTIHTLPA
ATITASGSTA ILPGGSVLLN ANTGTGFAYK WFRGTTQLSI ASAYEANTAG AYTVEVTNAN
DCKAVSAATI VTSATNQPSV ITITSPLPDA TIKGAITISA DISDADGAIT RVEFLDGTTV
IGTAAAAPYT FVWNTPGAGE HSITVRVTDQ NGGVTTSAPV TITSEQITTA VQSANSIQAF
VYPNPSAGEV FIETETDLST ADFTVVDVLG KEVSLSAMVT GNGATVDLSN LSVGTYVLLV
RDGNSILRKK ITLIK
|
|---|
| |