| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1162 |
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| Symbol | |
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| ID | 4184534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1341461 |
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| End bp | 1344436 |
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| Gene Length | 2976 bp |
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| Protein Length | 991 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638071159 |
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| Product | pectate lyase |
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| Protein accession | YP_677777 |
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| Protein GI | 110637570 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.211021 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATG TCTATTTAGT ACTATTCAGT ATACTGAGCA TTGTATTTGT ACAGGCACAG
GATAAATGTG CGCCCGTGGG CTGGGCCACA CAAAACGGAG GTGTAACGGG CGGCGGCTCT
GCCACACCTA CAGTTGTTAC AACCTATGCG GCGTTAAAGA CTGCACTTAC CAGCACTTCT
GTAAAAGTAG TACATGTATC CGGAACGATT ACCTTTCCAA CCAACGGACG CATTACCATA
CAGGATACCG ATGGAAAAAC CATTATCGGT TTAGCGGGTT CACGTATGAT CTCGGTTGAT
AAAACCAAAG ACGGTTCAGG AATTATGTAC ATCAAACGGT CTAAAAATTT CATCATGCGG
AATTTAACGT TTGAAGGTCC GGGGGCCTAC GACACAGATG GTAACGATAA CCTTACTATA
GATGCCTGTA CAAATTTCTG GGTAGACCAC TGCGATTTTC AGGATGGTAT GGATGGAAAT
TTCGACATTA AAAATGCTTC GGATTATATT TCAGTAACGT GGTGCAAATT CAGCTATATA
AAAGCCCCTA TACCAAACGG ACCGGGAGGT TCGGATGATC ACCGGTACAC AAACCTGATC
GGCAGTTCAG ACGGCGCCAC CGGTGATGCA GGCAAACTGC GTGTTACTTT CCAGTACTGC
TGGTGGGGAC AGGGATGTGT AGAACGTATG CCGCGTGTAC GGTTCGGTAA AATACACCTT
GCAAACAATC TGTATAACAG CACCGTTTCA AACAACGTTA TCCGCGCGGG CTATAAAGCA
GACCTGCTGA TAGAAAGCAA TGTTTTTATC GGTGTGAACA AGCCGATTGA TCTGTTTGAA
AATGATTTCA CGGCGGTAAC CGCACGCAAC AACATCTTTA CAAATACAAG CGGCAATACA
GCCGGAAGCG GTACATCCTT CACTCCTCCC TACACGCTGA CAGTTGCACC AGCAAATACG
GTGCAGGCAC TGGTAACAAA CACTGCCTGC GGTTCGGGCG CAACGCTGGA CAGCCCTACG
CAATGCGGCT GCGGAACAAC ACCTGTAAAC AATAACCCCA CAGCAACACT TTCTGCTCCT
GCCAATGGCG CTTCAGGCTG TATAGGAACG GCAATTACCC TGACAGCTTC TGCACAGGAC
AGCGATGGTA CCATTCAGAA AGTAGATTTT TACAACGGCA CTGCCTTGCT TGGTTCAGAC
AATACATCTC CCTACTCGAT TACCTATACG CCAACAGCGG CAGGTACCTT ATCCATCAAA
GCTACTGCTA CAGACAATGC GGGCGGTACC GGCACGTCTG CAACCAACAC AGTAACGGTA
TCTGCATTAC CAACGGCAAG CGTTTCTTCT TCAACCACCA ATCTGTGTCC GTCTGGTTCT
GTTGTGCTGA CAGCCACTAC AGGCGCTTCG TACAAATGGT TCAGAGGGAC AGAACAAGTG
GGAACCGCAG CAACGTACAC CGCTGCCGAA GCCGGTGCCT ATACCGTAGA AGTAACCAAT
GCGGCAGGCT GTAAAGCAAC TTCTGCAGCC AGAACACTTA CAGGGACACT TCAGGCAACC
CCAACGATAA CAGCATCAGC TACGTCATTC TGCGCAGGCG GTTCAGCTGT ATTAACAGCC
AGCAGCGGCG CTTCGTACAA ATGGTACAGA GGAACAGCAC CGGTGGGTAC AGCAGCATCC
TTAACCGTTA CAGAAGCAGG TGCCTATACC GTAGAAGTAA CGAATGCTTC CGGATGCAAA
GCAACATCGG CTGTAACACA AATCGCTGTG AATACCGCAA CAATACCAAC GGTAACGGCT
TCATCGACTT CATTCTGCGC AGGCGGTTCA GCTGTATTAA CAGCCAGCAG CGGCGCTTCG
TACAAATGGT ACAGAGGAAC AGCACCGGTG GGTACAGCAG CATCCTTAAC CGTTACAGAA
GCAGGTGCCT ATACTGTAGA AGTAACGAAT GCTTCCGGGT GTAAAGCAAC ATCGGCTGTA
ACACAAATCG CTGTGAATAC CGCAACAATA CCAACGGTAA CCGCTTCATC CACTTCATTC
TGCGCAGGCG GTTCAGCTGT ATTAACAGCC AGCAGCGGCG CATCGTACAA ATGGTACAGA
GGAACAGCAC CGGTGGGTAC AGCAGCATCC TTAACCGTTA CAGAAGCAGG TGCCTATACT
GTAGAAGTAA CGAATGCTTC CGGGTGTAAA GCAACATCGG CTGTAACACA AATCGGTGTG
AATACCGCAA CAATACCAAC GGTAACGGCT TCATCGACTT CATTCTGTAC AGGCGGTTCA
GCTGTATTAA CAGCCAGCAG CGGCGCTTCG TACAAATGGT ACAGAGGAAC AGTACCGGTT
GGTACAGCAG CATCCTTAAC CGTTACAGAA GCAGGTGCCT ATACCGTAGA AGTAACGAAT
GCTTCCGGAT GCAAAGCCGC CTCTTCCGTT ACGCAGATCA ACACAACACA GCAAACTGTC
TGGTATGCAG ACGCTGATAA CGATGGCAAA GGCGATGCAG CTTCAACGCT GCTTTCCTGT
ACGAAACCAC AAGGGTATGT TTCCGTATCG GGAGATGCCT GCCCGGCAGA CCCGGGAAAA
ACAGCTGCGG GCAACTGTGG CTGCGGCAAT ACAGAAGCTT CTTGTCTGGA TTGTTCGGGA
ACACCGAACG GAACTGCATT TTACGATAAC TGTTCCATCT GTGTAGGCGG CAATACTGAA
AAAACGGCTT GTGTAACAAC GGCAACAATT AATGGAACAA ATACAAATAT TAAAGTTGTG
CCGCAGCCTT TTGATGTGCA TACATCTATA TCAATAGAAA ATCTGGGCAT GATCCAATCC
ATCACAATCA TAAACAGTGC GGGTACAGTT GTTGAAACAA CTCAGCAGAT CAATGCACCA
TACATCACCG TGGGTGAATC GCTTGCATCT GGATTATACA CCGTTCTTAT TCATGTTGAA
CAGGGTGTGT ATACAACAAA GATTGTAAAA AAATAG
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| Protein sequence | MKHVYLVLFS ILSIVFVQAQ DKCAPVGWAT QNGGVTGGGS ATPTVVTTYA ALKTALTSTS
VKVVHVSGTI TFPTNGRITI QDTDGKTIIG LAGSRMISVD KTKDGSGIMY IKRSKNFIMR
NLTFEGPGAY DTDGNDNLTI DACTNFWVDH CDFQDGMDGN FDIKNASDYI SVTWCKFSYI
KAPIPNGPGG SDDHRYTNLI GSSDGATGDA GKLRVTFQYC WWGQGCVERM PRVRFGKIHL
ANNLYNSTVS NNVIRAGYKA DLLIESNVFI GVNKPIDLFE NDFTAVTARN NIFTNTSGNT
AGSGTSFTPP YTLTVAPANT VQALVTNTAC GSGATLDSPT QCGCGTTPVN NNPTATLSAP
ANGASGCIGT AITLTASAQD SDGTIQKVDF YNGTALLGSD NTSPYSITYT PTAAGTLSIK
ATATDNAGGT GTSATNTVTV SALPTASVSS STTNLCPSGS VVLTATTGAS YKWFRGTEQV
GTAATYTAAE AGAYTVEVTN AAGCKATSAA RTLTGTLQAT PTITASATSF CAGGSAVLTA
SSGASYKWYR GTAPVGTAAS LTVTEAGAYT VEVTNASGCK ATSAVTQIAV NTATIPTVTA
SSTSFCAGGS AVLTASSGAS YKWYRGTAPV GTAASLTVTE AGAYTVEVTN ASGCKATSAV
TQIAVNTATI PTVTASSTSF CAGGSAVLTA SSGASYKWYR GTAPVGTAAS LTVTEAGAYT
VEVTNASGCK ATSAVTQIGV NTATIPTVTA SSTSFCTGGS AVLTASSGAS YKWYRGTVPV
GTAASLTVTE AGAYTVEVTN ASGCKAASSV TQINTTQQTV WYADADNDGK GDAASTLLSC
TKPQGYVSVS GDACPADPGK TAAGNCGCGN TEASCLDCSG TPNGTAFYDN CSICVGGNTE
KTACVTTATI NGTNTNIKVV PQPFDVHTSI SIENLGMIQS ITIINSAGTV VETTQQINAP
YITVGESLAS GLYTVLIHVE QGVYTTKIVK K
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