Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1075 |
Symbol | |
ID | 4184352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 1243716 |
End bp | 1251788 |
Gene Length | 8073 bp |
Protein Length | 2690 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638071074 |
Product | beta-glycosidase-like protein |
Protein accession | YP_677692 |
Protein GI | 110637485 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3405] Endoglucanase Y |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.243053 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAGA AATTTAATCT AAAGCTTATT GTGTTTTTGA TTGCCTGTCT GTACAGCGCG ATGCTGTCGG CGCAGATCAA TACACCATCC GGAGCTGTGG TACCATTTAA CTCGAATCCG AATTATGGTG GTAACGGTAT TATGCCAACC AACCTGCCAA CCACCGGAAC ATATGGTAAA TCGCAGGATG CGGCAGATGC CTATAATGAG TGGAAAGCTG CCTATACAGA AACATGTACA GGTGATATGA TCCGTATCAA ATTTGATGAG CCGAATCGTA CCGTGTCTGA AGGTATTGCG TATGGTATGC AATTAGCTGC CTATGCTGCG GATAAAGCGT TATTTGATGG TTTGTATAAA TACTGGAAAA ACTTCCAGTC TCCGAATTCA TCCGGTAAAG CCGGTAAGTT AATGAACTGG AGAATCAATG GCTGTTCAGG CGTGAGTGGT ACAGGCAGTG CTGCCGATGC TGACGTTGAT GCTGCATGGG CATTAATGAT CGCAGAAACT CAATGGCCGA ATCTGAATAC ACCTTATGAT TATATCACTG AAGCAAACAA TATGCTTAAT GCCATTAAGG AATTGGAAAT GCTGAATGGT CAGCTTATCA ATGGTGATGG CTGGGGATTT GCTGATCAGT GCCGCAACCC TTCGTATCAG TCTCCTGCAT ATTATGAATA CTTCAAAGTT GTAAATGCAG GTAACTCAGG TACATGGAAC GGTGGAATTA CAGGAGCCTA TAATCTGATT AATGCAAACG CTGACGTTAC TACCGGTTTA ATTTCGGATT GGTCAAATCC AAGCGGTGTT AGAAATACCT GTAACCCGGG TGGACTTGGA CAGGCAGCAA CAGATGGTTA TGGCTATGAT GCCTGTCGTA ACCCATGGAG AATGGCACAG GATGTAATCT GGAACAACAA TGCCAACGCA AAAACGATTT GCGGCAAAAT TACCGATAAG TATATCAATG TAAAAGGTCC CGGTGGCGTA GGTGGTCCGT TATATCAGAA TGGTAATAAC TATGCCGGTT TCTCACACAA TGCAACATTC GTTTCCACAT TTGCAATGGC TGTTATGGGT TCAACCAACC AGGCGTTGAT GAACTCCATG TATACAGAGA CAAAAAATAC AAAAGATGTA ATTAAAAACT CTACACTTTC CGGTTATTTC GGTAATACAT TGCGCTGCGT GTCTTTATTT ATGATGACAG GTAACTTCTG GAAATACGGA ACAACTTCTT TCCAGGATAT AAATGTTCGC AGAGGTACAA CTACTGTAAG TGTATTGTCA GGAACAACGT ATGATTTCCA GACACAGCAA ATAAACACAG GCGGTAAAGT TGGAAACTTT ACGATTGAAA ACCTTGGTTT TGCATCGTTG ACATTATCAG GATCACCAAT AGTTGTTTTA AGCGGTACAA ATGCTGCCGA CTTTATTTTA ACGCAACCAA CAGCTACTTC GTTAGCATTG AGCCAAACAA CAACTTTTAC GGTAACATTT AAACCAACTA CAGTAGGGGA TAAAACAGCT AAATTAACGA TAGCGAGTAA TGACCCGGAT GAAGCTTCGT ATGTTATTAA CTTAACCGGT ACAGGTACAT TAAATGCAAC TGCTCCCAAA ATGTCTGTAT TTGATGCAAG CACCGGAGCA GCCGTAACAA ATAATGGTAC AGTTTCAATG GGAACTGCGT CTGCAGGTTC AGCCAATTTA AAACGGTTTG GTATTGTAAA CACAGGTGAT GCTGCGTTAA ATATTCCGCC TACAGGTACT GTTGGTTATA CTGTAACCGG TACAGGTTAT TCACTTGTAA CAACAACGCC CGGAGCTGTA GCACCAACAA TCGTTGCAAT CGGTGATACA GGATATGTGT ACGTTGAAGC AACAAGCTTA ACTGCCGCAA ACCTTTCCGG TTCATTAACG ATTATATCGG ATGACAATAT CAATCCTTCT TTCAAGATTA ACCTGACATC AGCTTTTGTG GCATGTGCCA CGGCTGTTAC TACAAACGAT GTGTATCAGG ATTATAATGC GAATGCCAAA AATTCAACTG CCGGTACAAT CTCCGGTTTT ACTGAAAGTG TAGACAATTT ATATATATCA GAAAAAAACC CTTCCACGAA AGTAGGCAGA TTGGTTCGTA ATACTTCAGA ATACCAAGGG CCAAGATATA CCTTATGTGG TTCAACAGTA AATCTAACCG CAACTAAATT TGCGATCAGT ATGCTGGTTT ACTCACCGGC AGCAGGTATT CCTATTAAGA TGGGATTAAA AACGGATGCA GATGTTGCTG ATCTCAGCTA CCCGGAAAGA AGCGGTGTTA TTGTTACTAC AACAAAAGCA AATCAGTGGG AGCGACTTTA TTTCTATCAT TCCGGAGCTA TTGGTGTTAC AGGTATCCGC CACATAGAAA TATACATTAA TCCTACTGCA CCTATTTCAG CCGGAACCTA TTACATTGAT GATATCAGAT TAGAGTCTTC ACCATGTCTG ACTGATAATT CAGGTATAAT TCAGGATTTT AATGATCACA ATAACGTAAC CCTGTCTTAT CCGGTTGCCG GTTATGAGCC AGGTGCGGTA AACGATAAAG CAGTTGGATT AAATACCAGC ACAAACATTG GTAAATTTAC AAAGTCTGCA GCTACGCTTG CTTACAAAGA CGGTATACGT TACATCGGTT GCGGCGGTAA ATTTGACATA TCTACTAAGA AGTATGTCAG TATGCTGGTT TATTCAACTG TTGCAAATGC AAAAATTAAT ATGTCACCTA AAATAGGGGC AAATGATGCA TTGGTTTCAG CTCCATCAAC AGTAACCGTT TTTGCAAATC AATGGCACCG TATATACTTT GATTTATCTG CAGTTTCTGC TACGGACATT CCTAATATAA CAGGTATAGA TATTTTCTTT GATCCGTTAA ATGATCTTGG AGCCCAAACA TATCGATTTG ATGATATTCG TTTTGAAAGT GCTTTACCAT GTATAGCGGG TATTGATGCA ACAGAGATTT TAAATGACTT TGAAAACAAC AGATTCCTTG GTGTTGCTTT TCCTGGAGAA ACTCCGGTTA CAGGTGAGGT AACTTACTTT AACACGGTTT CTGCTAACCC AAGTGCTACA GGTGCTAATA CAAGTACCGT TGTAGGTAAA TTCTTAAGAG GAACTGCTTC TACAGGAACA TCTTTCCGCT TTACAGCTTG TCAGAGTAAA TTAAGTTTAA CTCCGGGAAG AGCAATAATT GATTTGAAGA TGTACTCTCC AAATGCAAAT GTTGCAGTTG TAATGTCGTT AAAAAATGCA GCTGGTGTAT CGCTAAGCGA TGTAACAGAT ACAATTAAGC TTGCTAATAC ATGGACAAAC TTACGTTTTG ACCACAGTAA ATTATTGAAC TCAACAGAAA TTGCCTTTAT TGATATCATT GTTGACGGTG CAGTTATTTA TTCAGGTACT TCTTCGACGG CAACAGCCCG AACGTATTAT GTAGATGATC TGAGATATTC TCTTCCTGCA CCTGAAATTA ATATTCAGGC AAATACAACT CCTGCATTAA CGGATATTCC TACAAGAGGA GCATTTAATA TGGGTACTGC TTCCATAGGT GATAGCACTA CGATGGATTT CAAAATCCAG AACAACGGTT TAGAAACATT AACATTGACA GGCACCGGTG CTGCAGCATT AGTGATAGGC GGTGCAAATC CTGCTGATTT CATTATTTCT ACAACACAAT CATTCTCAAC TTCTATCAGT GGTTTAAGTG TAACTGGCTT TACCGTTAAA TTTAAACCTA CAGCAGGAGG CGCACGTTCT GCATCAATCA CAATTGTGAG CAACGATGCA AATGAAAGTC CATATATCAT TTATTTAACC GGTACAGGAA CAGTACCTGT GGTAAGTGTA TTAAATGGAG GAACAACGAC TTCAACGGTT ATACCAAATA ATAACCCGAC GGCTATCAAT GTAGGTACAT CCGCTGTGGG TACACCTGCA ACGCCTGCTT ATACTTTCAG TATTAAAAAT ACGGGTGTTG GTCCGTTGAC TGTAAAATCC ATTACAGCTT CATCTACATC ATTATTTACA GTATCCACAT TGTCTTCTTC TACACCAATT CTGACAGGTG CCATTGCTAC CTTTACGGTA ACAGGTACAC CGGCAGCAAC TGGTTTAAAT ACAGGCTTCC TGACTATTGT AACAAATGAT CCTGCAACAC CTTCTTATAA AGTAAATATC ACAGTTACGG GCAGTGTTCC GGTAATCTCG GTTTCAGATG CCACACCTGC AGTTGTTATT AATAATAATA CAACACCGGT TTCAGTTGGT TTTGCACCAG TAAATACAGA TGCTGCAGCC TATACATTTA CGATCAATAA CACAGGAAGT GCTCCGTTAA CAATTACTTC CATATCAGGA TTACCTACAA CGGTATTTGC TATTAGTGGT GTTCCTGCAA CGGCAATTGC TGCAGGCGGA AGCGCAACCT TTAAAGTAAC GGGTAAACCG GCAGCAGCTG GTGTAAATAC AGGTTCAATT ACAATTGTTA CAAATGATCC TGTAACACCG TCTTATAAAG TAAATGTAAC GGTTACAGGT ACTGTTCCGG TAATCTCGGT TTCAGATGCC ACACCTGCAG TTGTAGTGAA TAATAATACA ACGCCGGTTT CAGTTGGTTC AGCACCTGTA AATACAGATG CACCAATCTA TACCTTTACT ATTAATAACA CAGGTCTGGC TCCATTAACA ATCACTTCAA TATCAGGGTT ACCTACAACG GTATTCGCTA TTAGTGGTAT TCCTGCAACA CCAATCGCGG CAGGCGGCAG TGCAACGTTT AAAGTAACGG GCAAACCGGC AGCAGCTGGC GTAAATACAG GATCTATTAC CATTGTTACA AATGATCCGG TTACAGGCTC ATACAAAGTA AATGTTTCTG TAACAGGTAC TGTGCCTGCA TTACAGGTAT TAAACAGTGC AACAGCTGTA ACATCTGACA ATGCACCGGC TATTTCTGTT GGTTCATCTA CGGTTGGTAC TTCTGCAGCA GCTTATACGG CGTTCTCTGT TAAAAATGCT GGTTTAGCTC CGCTTACATT TACATCGATT ACAAGTTCTT CTGCAGACTT TGTAATTTCA GCTGTAACAC CTGCAACACC TGCATCTATT GCAGCGGGCA ATTCAGCAAC ATTCACCGTT ACAGCCAAGC CGGCAGTTGT AGGAGCTAAT ACTGCTGTTA TAACTATTGT AACAAATGAC CCAACAAACC CTACCTTCAA ATTAAATGTA TCGGTTACAG GTATTGCTGC ATCAACACCT TCTGTACAGG TATTGAATGG CGCATCTATC GTAACAGATA ACTCTACGGC AATACTGGTA GGTACTGCTC CTGTAAATAC AACGGCAGCA CCTTTCACAA CGTTCTCAAT TAAAAATAAC GGAACAGCTG CTTTAGACTT CACATCGATT ACAAGTTCTT CTGCTGATTT CGTAATTTCA GCGGTAACAC CTGCAGCACC AACATCTCTT GCAATAGGTG CATCTGCAAC ATTTACAGTA ACAGCCAAAC CTATGGTACT TGGAACTGGA AATACAGCGG TAATCACTAT TGTTACAAAC GATCCGACAA CAGCATCGTT TAAGTTAAAT GTAACGGCTA CAGGTACAGC ACCCGCTATT CAGGTATTTG ATGGTGCCGG TACAACGACT CAGATCACAT CAGATAACGT AACTGCCATT TCATTAGGCA CAGCTACGGT GACTGAAGCG GCAACGCCTT CGCACACATT TACAATTAAA AATAACGGTA CAGCTCCTTT AACAGGACTT GCATTAACAG CAACGGCAGG TTTTGAAGTT TCTGCTTTAA CACCGGCAGG TACTTCGCTT GCACCAAATG CAACGGCTAC GTTTACCGTA ACAGGTACAC CTGCTTTAGT TGGAGCAAAC ACGGGTTCGA TTACAATTGC TTCAAATGAC GGAACAACTC CGGCATTCAA GATCAATGTA AGCGTTACAG GTACTGCTGC TCCTGCAAAA CTACAAGTAG TAGATGGAAC AAGTATTTTA ACATCTAACG GTACTGCAAT TTCACTTGGA ACAGCAGTGG TAGGTTCAGC TGTACCGGAT TACACTACCA TATCTATTAA AAATACTGGC GGATCACCGC TTACGTTTAC ATCCATTACA AGTTCTTCTG CTGTATTTGT TTTAGCAGAT GTAACGCCAG CAGCTCCCGG AACAATAGCA GCAGGTGCTT CTGCAACGTT TACAATAAAA GCGACACCGG TATTAGGTGC TAATACAGGA AAGATTACGA TTGTAACAAA TGACGCAACT ACACCTTCAT TCGTTATTAA TGTATCTGCA ACGGGTACAT CTAATCCGGT ACCTGCCGTT CAGGTACTTG ATGGTTCTAC TCAATTGGTG ACAAACGGAA CAGCCGTATC ACTTGGTACA GCTCCTGTAG GTACAGATGC TCCGGCATAT ACAACGTTAT CTATAAAAAA TAACGGTACG GCTCCGCTTA GCTTTACATC AATAACAAGT TCATCTGCCC AATTTGTAAT AACGGATGTC AGTCCGGCTG CACCTACTAC ATTAGCTGTG GGCGCTTCGG CAACATTTAC AGTAACGGCT AAACCATTAG TGGTTGGTAC TGCAAATACA GCTAAGCTTA CAATTGTAAC AGACGATCCT GCAACAGCAT CATTTGTTGT AAATGTTAGC GTAACAGGTA CACCTGCTCC ATTGCCATCA TTACAGGTAT TAAATGGTTC TGCGATTGTT ACAAATAATA ATGCGACACC TATTTCATTA GGCACGGCTG CGGTAGGTTC ACCTGCTCCG GCATACACGT CGCTGTCAAT TAAGAATAAC GGATCCGCTC CGCTTACCTT TACGTCAATA ACAAGTTCAT CTGCACAATT TGTAGTATCT GGTGTAACGC CGGAGGCACC TACAACATTG GCTGTCGGAG CTTCTGCAAC GTTCACGGTA ACAGCTACTC CACTTGCTGT TGGTACAGGA AATACAGCGA AGCTTACCAT TGTAACAAAT GATCCTGCAA CACCATCTTT TGATGTTAAC GTAGCGGTTA CAGGTACGCC AGCTCCGAAA CCGATAATTA CAGTAACCGG TGTCACAAAT AACGGATCTA CGGTTTCTAT CGGAAATGTG ACAGAAAATA CTGCAACGGC TCCTTATACA TTTACGATAT CCAATACAGG CTCATTACCG CTGGAAGTTG GATCAATTAC ATCTTCGAAT CCGGTGTTTG TTGTTACGCA GGTAAATCCT ACTACAATCG CTCCGAATTC TACAGGTACG TTCACCGTAA TTGGTACACC AACAAGTGTT GGTACAGTAA CCGGAAAAAT TACGATTCCA AGTAATGATA TCAGTACACC TTCATTTGTA ATCAATGTAA GTGTAACGGG TAAAACAGCC CCTTCAGGAG CAATACTTGA AATATTGAAT AAATCTGCAA TCGTAATGGT TAACGACGGT ACTCCAATGA TGATTGGTGC TAATTCAATC AATACGGTTA CAGCGCCTTA CCAGTTTACA CTTACAAACC CTGGTACAGT GGCAGTAAAC ATTGGAGGCA TAACGGCTAC TACAGGATTT ATTGCAACTC AAATGAATCC TACCGGTACA ACACTTGCTC CTGGTGCAAT TGCAACATTC ACCGTAAGAG GTACACCAAA CAGTGTGGGT ACACCAAGAC AGGGTAGTGT TATTATAAAA TCGAATAATG CAGCGGGTGG AGATTTCATA TTAAACGTTT CAGTTGAAGT AGGTACACCT ACAGGTGTTG CTTCTGCATT GGCTGCTACA GAAATTGATC TGTTCCCGAA CCCGTCTACA GGCTCAACGA ACTTAGAATT CAATGGTTCA TTTAATGAGG TAGCTGTAAC AATCTACACT ATTGATGGAA ACAAAGTATT TGCAAGTGAG TATGCTTCTG TTGATCCGGG TGCATTAAGA ACACTTAATG TTGAAGAACT ACCTTCAGGT ATTTATATCG TAGAGGTATC TACAGCAGAA GGTAAATTAG TTAAGCGTTT GATTAAGCAA TAA
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Protein sequence | MIKKFNLKLI VFLIACLYSA MLSAQINTPS GAVVPFNSNP NYGGNGIMPT NLPTTGTYGK SQDAADAYNE WKAAYTETCT GDMIRIKFDE PNRTVSEGIA YGMQLAAYAA DKALFDGLYK YWKNFQSPNS SGKAGKLMNW RINGCSGVSG TGSAADADVD AAWALMIAET QWPNLNTPYD YITEANNMLN AIKELEMLNG QLINGDGWGF ADQCRNPSYQ SPAYYEYFKV VNAGNSGTWN GGITGAYNLI NANADVTTGL ISDWSNPSGV RNTCNPGGLG QAATDGYGYD ACRNPWRMAQ DVIWNNNANA KTICGKITDK YINVKGPGGV GGPLYQNGNN YAGFSHNATF VSTFAMAVMG STNQALMNSM YTETKNTKDV IKNSTLSGYF GNTLRCVSLF MMTGNFWKYG TTSFQDINVR RGTTTVSVLS GTTYDFQTQQ INTGGKVGNF TIENLGFASL TLSGSPIVVL SGTNAADFIL TQPTATSLAL SQTTTFTVTF KPTTVGDKTA KLTIASNDPD EASYVINLTG TGTLNATAPK MSVFDASTGA AVTNNGTVSM GTASAGSANL KRFGIVNTGD AALNIPPTGT VGYTVTGTGY SLVTTTPGAV APTIVAIGDT GYVYVEATSL TAANLSGSLT IISDDNINPS FKINLTSAFV ACATAVTTND VYQDYNANAK NSTAGTISGF TESVDNLYIS EKNPSTKVGR LVRNTSEYQG PRYTLCGSTV NLTATKFAIS MLVYSPAAGI PIKMGLKTDA DVADLSYPER SGVIVTTTKA NQWERLYFYH SGAIGVTGIR HIEIYINPTA PISAGTYYID DIRLESSPCL TDNSGIIQDF NDHNNVTLSY PVAGYEPGAV NDKAVGLNTS TNIGKFTKSA ATLAYKDGIR YIGCGGKFDI STKKYVSMLV YSTVANAKIN MSPKIGANDA LVSAPSTVTV FANQWHRIYF DLSAVSATDI PNITGIDIFF DPLNDLGAQT YRFDDIRFES ALPCIAGIDA TEILNDFENN RFLGVAFPGE TPVTGEVTYF NTVSANPSAT GANTSTVVGK FLRGTASTGT SFRFTACQSK LSLTPGRAII DLKMYSPNAN VAVVMSLKNA AGVSLSDVTD TIKLANTWTN LRFDHSKLLN STEIAFIDII VDGAVIYSGT SSTATARTYY VDDLRYSLPA PEINIQANTT PALTDIPTRG AFNMGTASIG DSTTMDFKIQ NNGLETLTLT GTGAAALVIG GANPADFIIS TTQSFSTSIS GLSVTGFTVK FKPTAGGARS ASITIVSNDA NESPYIIYLT GTGTVPVVSV LNGGTTTSTV IPNNNPTAIN VGTSAVGTPA TPAYTFSIKN TGVGPLTVKS ITASSTSLFT VSTLSSSTPI LTGAIATFTV TGTPAATGLN TGFLTIVTND PATPSYKVNI TVTGSVPVIS VSDATPAVVI NNNTTPVSVG FAPVNTDAAA YTFTINNTGS APLTITSISG LPTTVFAISG VPATAIAAGG SATFKVTGKP AAAGVNTGSI TIVTNDPVTP SYKVNVTVTG TVPVISVSDA TPAVVVNNNT TPVSVGSAPV NTDAPIYTFT INNTGLAPLT ITSISGLPTT VFAISGIPAT PIAAGGSATF KVTGKPAAAG VNTGSITIVT NDPVTGSYKV NVSVTGTVPA LQVLNSATAV TSDNAPAISV GSSTVGTSAA AYTAFSVKNA GLAPLTFTSI TSSSADFVIS AVTPATPASI AAGNSATFTV TAKPAVVGAN TAVITIVTND PTNPTFKLNV SVTGIAASTP SVQVLNGASI VTDNSTAILV GTAPVNTTAA PFTTFSIKNN GTAALDFTSI TSSSADFVIS AVTPAAPTSL AIGASATFTV TAKPMVLGTG NTAVITIVTN DPTTASFKLN VTATGTAPAI QVFDGAGTTT QITSDNVTAI SLGTATVTEA ATPSHTFTIK NNGTAPLTGL ALTATAGFEV SALTPAGTSL APNATATFTV TGTPALVGAN TGSITIASND GTTPAFKINV SVTGTAAPAK LQVVDGTSIL TSNGTAISLG TAVVGSAVPD YTTISIKNTG GSPLTFTSIT SSSAVFVLAD VTPAAPGTIA AGASATFTIK ATPVLGANTG KITIVTNDAT TPSFVINVSA TGTSNPVPAV QVLDGSTQLV TNGTAVSLGT APVGTDAPAY TTLSIKNNGT APLSFTSITS SSAQFVITDV SPAAPTTLAV GASATFTVTA KPLVVGTANT AKLTIVTDDP ATASFVVNVS VTGTPAPLPS LQVLNGSAIV TNNNATPISL GTAAVGSPAP AYTSLSIKNN GSAPLTFTSI TSSSAQFVVS GVTPEAPTTL AVGASATFTV TATPLAVGTG NTAKLTIVTN DPATPSFDVN VAVTGTPAPK PIITVTGVTN NGSTVSIGNV TENTATAPYT FTISNTGSLP LEVGSITSSN PVFVVTQVNP TTIAPNSTGT FTVIGTPTSV GTVTGKITIP SNDISTPSFV INVSVTGKTA PSGAILEILN KSAIVMVNDG TPMMIGANSI NTVTAPYQFT LTNPGTVAVN IGGITATTGF IATQMNPTGT TLAPGAIATF TVRGTPNSVG TPRQGSVIIK SNNAAGGDFI LNVSVEVGTP TGVASALAAT EIDLFPNPST GSTNLEFNGS FNEVAVTIYT IDGNKVFASE YASVDPGALR TLNVEELPSG IYIVEVSTAE GKLVKRLIKQ
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