| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1051 |
|---|
| Symbol | |
|---|
| ID | 4185009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 1211964 |
|---|
| End bp | 1215851 |
|---|
| Gene Length | 3888 bp |
|---|
| Protein Length | 1295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638071050 |
|---|
| Product | endoglucanase-related protein |
|---|
| Protein accession | YP_677668 |
|---|
| Protein GI | 110637461 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5276] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.222685 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA GATTTTTAAC GATGCTTATG TGTGTCGTAT TTGCCCCGGG ATTTTTACTT
GCACAAGTTG GTCCGGGTTT AGGAAATCTT ACGTATCCAC AGTCCGATCT TTATAAAGCT
ATCTGGAAAT ATACAGAAGT AAACCATTAT GGTTCCAATA TAGCTACGAT GCATAACGGA
TATCTTGTTA CAACCTTTAC GCCCGATAGC GGTAAACCTC CGGGAGGTAT TTTAGTGTGG
GATGTTTCGA ATCCAAGACG GCCTATTCAG GTGGCACGGA TATACGATTC AAGAACGTCA
ACGTTCCGTG AACAGCATGC CCTTCCGCAG CACGATAAAT ATATTTTAAT GCAGGATGGT
TGCGGTTTTC AAATTTGGGA TTTTAGCGAT CCGAGAAATC CAAAGCAGAC CAAGAGACAT
TGCATGACTG GTTATGCACA TGATGATTAT GGTTCAACCT GGCAAATGTT CTGGCAGGCA
CCCTACATTT TTATTGCGAA TGGCAGCAGA GGATTTGATG TCGTGGATGC AACGGACATT
AACAATCCTC AATTTGTAAA ACATATAACT ACTCCAAGAC AGATAGGGTC CATCTATGCT
ATAGGAAACC TTCTGGTTAC TTCTGCTCAT GACTTTGGTA AAGGAATTAC CATTTATGAT
ATCAGCAATC CGCGTGACCC CAGATTATTA AACAGTTTCA GTAACACGGA GAATATGTAC
GCTTCCATGG TGAATGGGAA TAAGCTCGTC ATTTCAGCAA GAGGAAATAC CAATAATATG
GTCTTTGGGA CCTACGACAT CAGCGACCCT TTAAACATAC GGAAGCTGGG TACGTTGAAT
ATTGGTAATA GTGGAGAACA ACTTTATAAC TCCATGCAGG ATCAGTTTAT TTTCCAGGGC
TGCCAGAGTG AGGTTGTTAA AATTAATGCA TCCAATCCCA ATCAACTTAC CATAGAAGGC
AGAGGATCTT TAGGAATTAA TGGCGACTCA GACCATGGAC AGGTTTCGCC ATTTGGAAAT
TTAATTTTTG TAGGAAACGA TCATGGCTCG GGAAGCGGAT TTTGGGTGCA TCAGGTGCAG
CCCGATAAAA AAGGGCCTGA CGTAAATATG ATTTCACCAC GTAGCAACGA GGTTAGCAGA
GCGCTTACTT CCCGTATTGG AATAACACTT ACAGATCACA TTCAGATTGA GTCCGTAAAT
AAGAATACGT TTATCGTCAG ACCTGTTGGA GGGGCTGCCA TATCCGGGAA ATACAGCCAT
CAGTTTGCAA TTGTAAACTT CAGCCCGGAT CAGCCACTGT TACCAAACAC TACCTATGAA
GTTATTATTC CTGCAGGAGG GATCAAAGAC TACGCTGGAA ATACATCAAC ACAAACATTC
ACCTCGTATT TTTCGACAGG TCCAACGGGT AATTTTCCTC CAGGTACCGC TGGTACGCCC
TGGGTATTTG AAGACGATAA ACAAGTGACC TTAAACTGGG ACAGAATTTC TAATTCAACA
GGGTCTGTGA TCAAAAGAAG TACTTCGCCA ACAGGTCCTT TTCAGACCAT TGGTACAACG
ACCCAGCTTT CTTACATAGA CAGAAATCTT ACCAACGAAA CAACTTACTA TTACCAAATA
GTGGGGGAAA ACAGCTTCGG ACAAGGTGTA GCGTCGGTTG CAGTAAGAGC GAAGCCAGCA
TTCTACATTA CATCCTTAAA TTATACGTCA CAAACAAATG GTTGGGGGCC GGCAGAAATA
GATCAAAGTA ATGGTGAAGC TGCTGCCAAT GATGGTAATG TCATTACACT AAATGGCGTA
GAGTATTCCA GAGGTTTAGG CGTTCACGCC CAAAGTACAA TCAAATATAA TTTAGAGGGC
AAATACGATC GGTTTTTGTC TGATGTAGGG GTAGATGATG AAGTAGGTAA CATAGGATCC
GTCGTTTTTA CGGTCAGCCT AGATGGCGTA CAGATCTATA CAAGTGGCTT GATGAATGGA
ACTACTGCTA CCAAAGCCAT AAATGTATCT GTTGCTGGAG GAAGAGAACT CACATTAACC
GTTACGCAGG ATGCAGATAA CGGAGGGGAT CATGCATCCT GGGGAGGTGC AAGGCTTATA
CCTGTCGTAA ACCAGGCGCC ATCTGTTGTT ATATCAGGTC CTGCGACTAA CAGTACATTC
ACAACGCTTG AAACGATTAC TCTTACAGCT ACAGCAACCG ATACGGATGG AACGATTTCT
AACGTGGAGT TTTATAATGG AACAACAAAA TTAGGAGAGG ATGCAACTAC GCCTTATTCC
TATTCATGGA CAAATGTTGC TGTTGGTACC TATACGATTA CGGCCATTGC GACGGATAAT
TCCGGAAATA AAAAAACATC AGCACCTGTT ACCATAAAAG TCAATGTACC TCAGGGACCC
TACAATGGAA CAGCACACAT CATTCCTGGT ACCATTGAAT TTGAATCGTA CGATGTAGGC
GGAAACGGTG TTGCGTATCT GGATAACAGT CCGGGCAGCT TGGTAACGCC TGTTGTAAAT
TTCAGGACAA ATGAAGATGT AGATATTGAA ACTTGTACGG ATGCTGGAGG AGGATACAAT
ATTGGCTTTA CAACCGCCGG TGAATGGCTG GAGTACACCG TCAACGTGCA GGCAACGGGT
ATCTATGCGA TGGATCTTCG CGTAGCCTGC CTGGGCGATG GCCGTACAAT ATCCGTAAGT
ATGGATGGTA CAAACATAGC CAGCAATGTC GCGATACCGA ATACAACGGG CTGGCAGACC
TGGCAGACAA TACGATTAAA CAATATATCT CTTACAGTCG GTCAGAAGAT TATGCGAATG
ACAGTAGGAG CTACCGACTT TGTTAATCTG AACTACGTTA CGTTTACCTT GGTACCACCT
CCTGTAGCCA CCATTACAGC TACCGGCGCC ACTGCATTTT GTGCCGGAGG AAGTGTCGTT
CTGAACGCGG GTACTGGAAC AGGCTATACG TATCAGTGGA AAAGAGATGG GAACAATATA
GCAAACGCAA CCACTTCAGC GTATACAGCG ACTCAATCAG GGAGCTATAC AGTCACAATA
AGCGCCAACA GTCAGACTGT AACATCAACA GCGGTTGCCG TAACAGTTAA TGCCTTGCCA
GTGGCAACCA TTTCTTCATC CGGACCGACA ACATTTGTGC AAGGAGGCAG TGTAACGTTA
CAAGCAAACA CGGGAGCAGG CTTAAGTTAT AAGTGGTTTA ATGGAACCTC TCAGATAGCT
ACAGGTTCAA CATATGTGGC AAGTGCTACA GGAAGCTATA CCGTAGAAGT AACCAATGCA
TCCAACTGCA AAGCTACATC ATCATCTATC AGTGTCACAG CAAATCAGAA TCAGCCCTCT
GTCATTACGA TCAACAGCCC AGTTGCTAAT TCTACAGTAA GTGGTCCAAT CAGAATAGAG
GCAACGGTCT CCGATCCTGA TGGAGCAATT GCGAAAGTAG AATACCTCGC CGGCACTACC
TTACTTGGTA CAAGCACATC ATCTCCATAC AACTTTATCT GGCAAACTCC AATATCGGGT
AATCATGAGA TTACAGTAAG GGTAACAGAT AGCAATGGAG GAATAACGAC TTCATCACCT
GTAACTATGA TATCCGGTAC GATTACGGGA ATACATTCTT CTACAGAAAT TCAAATCACG
GTTTATCCAA ATCCATCTTA TAAAGAAATT ACACTTGAGA CAGAGATGGA TCTGACCAAT
GCAAAAATTA CCGTGATCAA TGTTCTTGGA CAAGAAATAC AACTCCCGTC AACGGTGAAT
GTAAATGGAG CAAACATTGA TGTAAGCAGC CTTACAGAAG GAACGTATCT GCTTATTGTA
AGACATGAAA ATAACGTTAT AAAGAGTAAA ATATCAATTG TGAAATGA
|
|---|
| Protein sequence | MKKRFLTMLM CVVFAPGFLL AQVGPGLGNL TYPQSDLYKA IWKYTEVNHY GSNIATMHNG
YLVTTFTPDS GKPPGGILVW DVSNPRRPIQ VARIYDSRTS TFREQHALPQ HDKYILMQDG
CGFQIWDFSD PRNPKQTKRH CMTGYAHDDY GSTWQMFWQA PYIFIANGSR GFDVVDATDI
NNPQFVKHIT TPRQIGSIYA IGNLLVTSAH DFGKGITIYD ISNPRDPRLL NSFSNTENMY
ASMVNGNKLV ISARGNTNNM VFGTYDISDP LNIRKLGTLN IGNSGEQLYN SMQDQFIFQG
CQSEVVKINA SNPNQLTIEG RGSLGINGDS DHGQVSPFGN LIFVGNDHGS GSGFWVHQVQ
PDKKGPDVNM ISPRSNEVSR ALTSRIGITL TDHIQIESVN KNTFIVRPVG GAAISGKYSH
QFAIVNFSPD QPLLPNTTYE VIIPAGGIKD YAGNTSTQTF TSYFSTGPTG NFPPGTAGTP
WVFEDDKQVT LNWDRISNST GSVIKRSTSP TGPFQTIGTT TQLSYIDRNL TNETTYYYQI
VGENSFGQGV ASVAVRAKPA FYITSLNYTS QTNGWGPAEI DQSNGEAAAN DGNVITLNGV
EYSRGLGVHA QSTIKYNLEG KYDRFLSDVG VDDEVGNIGS VVFTVSLDGV QIYTSGLMNG
TTATKAINVS VAGGRELTLT VTQDADNGGD HASWGGARLI PVVNQAPSVV ISGPATNSTF
TTLETITLTA TATDTDGTIS NVEFYNGTTK LGEDATTPYS YSWTNVAVGT YTITAIATDN
SGNKKTSAPV TIKVNVPQGP YNGTAHIIPG TIEFESYDVG GNGVAYLDNS PGSLVTPVVN
FRTNEDVDIE TCTDAGGGYN IGFTTAGEWL EYTVNVQATG IYAMDLRVAC LGDGRTISVS
MDGTNIASNV AIPNTTGWQT WQTIRLNNIS LTVGQKIMRM TVGATDFVNL NYVTFTLVPP
PVATITATGA TAFCAGGSVV LNAGTGTGYT YQWKRDGNNI ANATTSAYTA TQSGSYTVTI
SANSQTVTST AVAVTVNALP VATISSSGPT TFVQGGSVTL QANTGAGLSY KWFNGTSQIA
TGSTYVASAT GSYTVEVTNA SNCKATSSSI SVTANQNQPS VITINSPVAN STVSGPIRIE
ATVSDPDGAI AKVEYLAGTT LLGTSTSSPY NFIWQTPISG NHEITVRVTD SNGGITTSSP
VTMISGTITG IHSSTEIQIT VYPNPSYKEI TLETEMDLTN AKITVINVLG QEIQLPSTVN
VNGANIDVSS LTEGTYLLIV RHENNVIKSK ISIVK
|
|---|
| |