Gene CHU_0780 details

Gene Information

• Locus tag: CHU_0780
• Symbol: rpoE
• ID: 4184150
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cytophaga hutchinsonii ATCC 33406
• Kingdom: Bacteria
• Replicon accession: NC_008255
• Strand: +
• Start bp: 881700
• End bp: 882278
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 638070786
• Product: DNA-directed RNA polymerase specialized sigma subunit
• Protein accession: YP_677407
• Protein GI: 110637200
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.160939
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGTATTA AAGAAGAAGA TATAGTCTCC CTGATTAATA AGGGAAAGGA CCGGGAGGTT 
GTACCGCTAT TGTATAAGAA GGTATACCCC TTGGTTGAAC GCTATATTGT ACGTAATTCC 
GGCAAGAAGG ACGATGCGCA GGATGTCTTT CAGGATGCTC TTTTATTGTT TTATAAACAG 
ATCATGCTTA AAACATATGA TCAGAAATAC AAAGTGTTTG GTTACCTGTA TAAGATCTGT 
ATTTATAAAT GGGTGAATAA GGCAAAGAAG AACAGTAAAA TTGTTTTTGT TGATGAAATT 
GAAAAGTTTG AAGAGCCTGT TTACGATGAA TTTACAGAAA CGTTGATTGT ACATGCAGAC 
GAAAACATCA TCCGGAAGTT ATTTAATCCG ATAGGTGAAA AGTGCATTGA ATTGTTGACC 
TACACTACAT ACTCAAGCCT GTTGTTAGAA GATATTATGA TACGCATGGA TTTTAATTCG 
GTTAGTGCTG TTAAAATGCA GCTGAAACGC TGTAAAGAAA AACTACTGAA ACAAATAGAT 
GAAAATCCTG CTTTGATCAA TCAATTAAGA AGAAAATGA 

 

Protein sequence

MSIKEEDIVS LINKGKDREV VPLLYKKVYP LVERYIVRNS GKKDDAQDVF QDALLLFYKQ 
IMLKTYDQKY KVFGYLYKIC IYKWVNKAKK NSKIVFVDEI EKFEEPVYDE FTETLIVHAD 
ENIIRKLFNP IGEKCIELLT YTTYSSLLLE DIMIRMDFNS VSAVKMQLKR CKEKLLKQID 
ENPALINQLR RK