| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0483 |
|---|
| Symbol | truA |
|---|
| ID | 4185468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 565645 |
|---|
| End bp | 566391 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638070491 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | YP_677113 |
|---|
| Protein GI | 110636905 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGATATT TTCTGGATAT ATCGTATCGC GGTGCTAATT ATCATGGATG GCAGATACAG
GAAAACGCGG TAACGGTACA GGGGGTTTTA CAAAAAGCAT TGAGCAATGT GCTTGGTGCT
AAGATTGATA TACTTGGAAG CGGGCGTACA GATACCGGCG TGCATGCTTC TTCGCAGATT
GTTCATCTCG ATTCTCCCAA AGAAATTGAT GCAGCGCTAA TCTTCCGGAT AAACGGCTAC
CTGCCAAAGG ATATCTGCAT TAAATCTGCG CGTTTGGTGC AGGATGATGC TCATGCCCGT
TTTGACGCGC TTTCCAGAGC ATATGTATAT CGCATTACCT TAGTTAAGAA TCCGTTTGAA
ATTGGCCTGG CCTATTATTT TTATCCGCCA ATAGAAATTG ATCGAATGAA TAAAGCAGCA
GCAATTTTAT TGCAATACGA AGATTTTGAA AGTTTTAGCA AAGTGCATAC AGACGTAACC
AATTTTAATT GCACCATTTT TCACGCGTAT TGGGAACGTA ACGGTGACAT GCTGTATTTT
CATGTGAAAG CCAACCGTTT CCTCCGGGGA ATGGTACGCA CACTTGTTGG TACCATGCTG
GAAGTAGGCA AGGGGCGTAT GAGCCTGGAT GATTTTGTGC AGATCATTTT AGCAAAAGAC
AGAAAGCGGG CAGGAATTTC GGCGCCGCCG GAAGCATTGT ATTTATCAGA AGTTGAATAT
CCGGCGGAGG TATATAAGCA TGTCTGA
|
|---|
| Protein sequence | MRYFLDISYR GANYHGWQIQ ENAVTVQGVL QKALSNVLGA KIDILGSGRT DTGVHASSQI
VHLDSPKEID AALIFRINGY LPKDICIKSA RLVQDDAHAR FDALSRAYVY RITLVKNPFE
IGLAYYFYPP IEIDRMNKAA AILLQYEDFE SFSKVHTDVT NFNCTIFHAY WERNGDMLYF
HVKANRFLRG MVRTLVGTML EVGKGRMSLD DFVQIILAKD RKRAGISAPP EALYLSEVEY
PAEVYKHV
|
|---|
| |