| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0482 |
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| Symbol | ompA |
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| ID | 4185467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 563074 |
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| End bp | 564936 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638070489 |
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| Product | OmpA family outer membrane protein |
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| Protein accession | YP_677111 |
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| Protein GI | 110636904 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.83961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.790259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGTA TTCTATTTAT TCTTCTTTCT TTTTTTCTGT TTATCTGCTC AGTTTTCGGT
CAGGATGATA AACTGATCAA AAAAGGTGAC GCCGCTTTTC AAGCAAAAAA TTATTCAGAC
GCGTTTGTCA ATTATGAATT AGCCTGGCAG CAAAATAAAG AACATCCATA TGTAAACTTC
ATGCTTGCTC AGTGTTACCT GCTCACTTCT CCCAAGCAAA AAGCGCTGGA CTATGCGGGT
GTTGCGGTTC GTAAATCTCC TAACCCAACT AATGAAATGT ATTTTGTGTA TGCGCAAGCA
TTACATCAGA ATCACCGCTG GGATTCGGCT ATCTATTATT ACAAAAAATC TGATCCAGGA
AAACTGAATT CTAAAAACAT TTCACGTCTG GAAGGTGAAT GTATGAATGG CAAACGTTAT
ACAAGCAATC CTAAAAACAT AAAAATTACC AATGCCGGCG CATTGGTAAA CTCGCAGGGT
ATGGATTATC TTCCCAACAT TACAGCAGAT CTTTCTAAGC TGTATTTTAC TTCCCGCAGA
GGCGGCAGTA CCGGCGGCAA GCTTGAAGCC GACGGGCTTC CTTATGAAGA TATTTATATG
TGCAGCAATG TTGGGGGCGC CTGGAACCAG GCAATAAATA TAGGAGCGCC TTTAAATACA
GATGTACACG ATGCCTGTGT GGGTATTTCA GAAGGCGGGC AAACCATGTT TATTTACCGG
GGCGTGAATG GCGGAGATAT TTTTCAATCT GAATTAAAAG GAAAAAAATG GAGCGCCGCT
TCGCCTTTGC CCATGAATAC AGAGTTTTTT GAAACTTCAG CGTGTCTCTC ACCCGATGAG
CGTACCCTCT TTTTTGTCCG TGCAACAAAT GCCTATTCAA ACAGAGATAT TTATATGTGC
AGCAGAACCG TTGGCGGTAA TTGGAGCAAA CCTGTGAAAC TCACCATCAA TACCCCGTTT
GACGAAGACG CTCCGTATAT GCACCCGGAT GGAAAAACAC TTTACTTCAG TTCCAAAGGC
CATTCTACCA TGGGTGGTTA TGACGTGTTT AAAACAACAA AGTTAGCCAA CGGTGTATGG
TCAACACCGG AAAATATGGG CTCGCCTGTT AACACGGCGG GCGACGACGT GTATTTTGTA
TTATCTGCAG ATGGAAAAAT CGGTTATTAT TCTTCCAATA AAGAAGGCGG TTTCGGGAAG
CAGGATATTT ATTCGATCCG TATGCCTGCA GCAGAAAATG AACCGGAGCT TGCGTTGTTA
AAAGGCAAAA TACTTGACGA CCAGACAGGA AAACCAACGG AAGCTTCCAT CACCATTACA
GATAATGCAA CAAAGGAAAT TGTTGCCAGA TATAGGTCAA ATAGTGAAAC AGGTGAATAC
CTGCTTTCGC TGCCAGCGGG TAAAAACTAT GGGATTGCTA TTGAAAAAGA GGGCCATTTA
TTTTATTCCG AAAATATGAC ACTCAATAAT ACCAATGGTT TTAAAGAATA TAAACAGGAT
ATTACATTGG TAACAATTAA AACCTCCGGT AAAATTATTT TGAGAAATAT TTTCTTTGAT
TCCGGCAAAG CAACCATACG CTTAGAATCA ACGGCTGAAC TCTTAAAACT GGTTGACCTG
CTAAAAAACA ATCCAACCTT GCGTATTGAA ATTGCCGGCC ATACGGATAA TATCGGCGAT
GAAACATTAA ATCAGAAATT ATCTGAAGAA CGCGCTAAAA ACGTCGTAAC TTTTTTAACT
GCTAATGGCA TAAGCGCAGG CAGATTAGTT GCCAAAGGTT ACGGCTCCTC TCAACCTGTA
GCTCCGAATA CAACAGATAC CGGCAGGCAA CAAAATCGCA GAACTGAAAT AAAAATTCTA
TAA
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| Protein sequence | MNRILFILLS FFLFICSVFG QDDKLIKKGD AAFQAKNYSD AFVNYELAWQ QNKEHPYVNF
MLAQCYLLTS PKQKALDYAG VAVRKSPNPT NEMYFVYAQA LHQNHRWDSA IYYYKKSDPG
KLNSKNISRL EGECMNGKRY TSNPKNIKIT NAGALVNSQG MDYLPNITAD LSKLYFTSRR
GGSTGGKLEA DGLPYEDIYM CSNVGGAWNQ AINIGAPLNT DVHDACVGIS EGGQTMFIYR
GVNGGDIFQS ELKGKKWSAA SPLPMNTEFF ETSACLSPDE RTLFFVRATN AYSNRDIYMC
SRTVGGNWSK PVKLTINTPF DEDAPYMHPD GKTLYFSSKG HSTMGGYDVF KTTKLANGVW
STPENMGSPV NTAGDDVYFV LSADGKIGYY SSNKEGGFGK QDIYSIRMPA AENEPELALL
KGKILDDQTG KPTEASITIT DNATKEIVAR YRSNSETGEY LLSLPAGKNY GIAIEKEGHL
FYSENMTLNN TNGFKEYKQD ITLVTIKTSG KIILRNIFFD SGKATIRLES TAELLKLVDL
LKNNPTLRIE IAGHTDNIGD ETLNQKLSEE RAKNVVTFLT ANGISAGRLV AKGYGSSQPV
APNTTDTGRQ QNRRTEIKIL
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