| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0460 |
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| Symbol | |
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| ID | 4186327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 540898 |
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| End bp | 541512 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638070467 |
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| Product | rhomboid-like protein |
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| Protein accession | YP_677089 |
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| Protein GI | 110636882 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0322234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCAATC TATCGGTAAC AACTATTCTC ATTGTCATTA ATTGTGTTGT CAGCTATTTA
GCACTGAACA ACCCAACGGT GATGAACCGG TTGATCCTTA CTCCTTATTG GGTAGAGCGT
AAAAATGAAT ATTACCGTTT TATTACTTCC GGTTTTATTC ATGCGAATTT TATGCACTTA
GCTTTTAACA TGATCTCGCT GTATTTTTTT GGATACATAG TGGAATCCAA ACTGGGCGGC
ACCTTATTTA TTTTACTCTA CCTGCTGGCC CTTGTCATTT CAGACATTCC AACGTACCTG
AAATATAAAA ACAATTCGAA TTATGCTTCT CTTGGTGCAT CCGGCGCGGT TTCAGCAATT
ATCTTCGCTT CGATCTTATT TTATCCGGTG AATTTAATTT TTGTTTATTT CATTCCGGTT
CCCGCATTTA TGTTTGCTAT TTTATATCTG GCTTACTCTT ACTACATGGA TAAACGCAGC
GGCGATGCGG TAAACCACTC TGCACATTTT TATGGCGCGG TTGTAGGGTT GGTGTTTGTA
GGTGCGCTGG ATTACACACT CATTCCTGCC ATGTTCACGA CGATTGCAGA TGCCGTACTG
AATTTCTTCC GGTAA
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| Protein sequence | MINLSVTTIL IVINCVVSYL ALNNPTVMNR LILTPYWVER KNEYYRFITS GFIHANFMHL
AFNMISLYFF GYIVESKLGG TLFILLYLLA LVISDIPTYL KYKNNSNYAS LGASGAVSAI
IFASILFYPV NLIFVYFIPV PAFMFAILYL AYSYYMDKRS GDAVNHSAHF YGAVVGLVFV
GALDYTLIPA MFTTIADAVL NFFR
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