| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0217 |
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| Symbol | ompA |
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| ID | 4185322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 263473 |
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| End bp | 265482 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638070227 |
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| Product | outer membrane protein, porin F precursor |
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| Protein accession | YP_676849 |
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| Protein GI | 110636642 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.440167 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGAA GTACAATTAT CTTTATTCTT TTATCCATCT CTTTTGGTGG CTTCTCTCAA
CAAGTTCAAT GGGCATTTAA TGTGCTGGAG CATTCCAGTC AACGTGGCTC AAGAGATTAC
GCTGCAGTAC AGGCAGTAGG GGTACCCAAC GCATTGCCGA CCTTAGGTGA AAGTGTACGT
GCGTGGGAGC CGAAACAAAA TGAAAAAGAA AGTTATATTA AAGTAGGCTT TTTAAAGCCA
ATGATCCCCA AACAGGTTAT TATCAGGGAA TCCTTTAATC CCGGACACAT CACCGCAGTT
TATGCCTACG ATGCAGCAGG AAAGGAATTC CTTTTAGCAG AGACATCAAC CGGATACCTT
TCGCCAAATG GTTTATATCA TATTTCAACG AAAGAAATAA CATTTAATGT TCTTGCAGTT
AAAGTTGTAC TTGCAGGTAA AGGAGATGTT ATCGGAATAG ATGCCATTGG TATGACTACA
ACAGACAAAC ATTTTGTGAT TAAGCAAAAT GAAAATGATC TTATTAAATC AAACATGGTT
GCTACAAAAA TGAGTGACAG TGTAAATTCC AATTACATGG AAATTGGTCC GCTGGTTTCA
CCGGACGGGC AGACATTGTA TTTCAGCCGC AGCGGTGACC CCGCAGATAT GGGAGGCAAA
AAGGATATAG AAGACATTTG GTATTCACGC TGGGATGCTT CTACCAAAAG CTGGGGAAAA
GCTCATAACA TGGGCTGTCC GCTAAATAAC GAAGAACCCA ATTTTATTAA TTCAATTTCG
CCGGATGGGA ATACCGTTTT GCTAGGCAAC TCATATTATG AGGATGGAAC CATGTCTGAC
GGTGTTTCAA TCACTCACAA AACAGCCACC GGATGGAGCA AGCCTGAACG GTTGATCATT
GAAGATGAAG ATCGTAATAA AAGTGAGATG GTGAGTTATT TTATGTCTAA CAGCCAAAAG
ATCTTAATGA TCTCAAATAA TCGCAAGGGA GACAGTTACG GAAAAAATGA TTTGTATGTG
AGTTTTTTAA AAGCTGACAA TACCTGGACA AAGCCTTTGA ATCTGGGAAA CAAAATTAAT
ACAGATGTAA TTGAAGATGC ACCTTTTTTA GCATCGGATG ATAAAACACT CTACTTTACT
TCTCAGGGCC ATGGCGGTTA CGGTGGTTCA GATATATACA TGAGTAAACG TCTGGATGAT
ACCTGGCAAA ACTGGACAAC ACCTGAAAAC TTAGGACCTG TTGTAAATAG TGCGCATGAT
GAATCTTTTT TCAGCTTAAG CGCATCCGGC AAACAGGTAT TCTTTACTTC TCAGGTAGCA
GCAGATTCAA GAGATGTAGA CATGTATGTA CTGGAATTGC CTCCGATGTT AAGCCCGGAA
CCTGTTTTGC TGGTTCATGG ACATGTATAT GATAGCAAAA CAAAACAGCC GGTAAAAGGC
GTTAGAGTTA CATTTGAAAA TTTAACAACA GCAAAAGAGG TTGGTATAGC AAGTTCCAAT
TATGATTCGG CTACTTATAA AATAGTATTG CCTGCAGGTG CTAAGTACGG TTATCTGGCA
GAGAAAGAAG GGTATGTTTC GATTAATGAA AACATAGACC TTACGGATAT GAAAGCATAT
AAAGAATACG AAAAAGACTT ATATATTACT CCGATTGAAA CCGGTCAGGT AGTAGTTCTT
AACAATGTTT TCTTTGATTT TAATAAATAT GAATTGAAAT CAGAATCCTA CCCGGAACTG
GATAGATTAG TAACATTGTT AAAAAACAAC AATGCCATGA AAATTGAAAT TTCAGGCTAC
ACCGATTCAA TCGGTACGAA ATCATATAAT GACAAACTAT CTGGAAGACG TGCACAGGCA
GTTGCTACGT ATCTGATCAC AAAATCGGCC ATTGATAAAA GCAGAATCAC TGTAAAAGCT
TTTGGCGAAG AGAATCCGGT TACTTCTAAC AAAACTGCGA AAGGCAGGGA ATTAAACCGA
AGAGTAGAAT TTAAAATCAC TAATAAATAA
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| Protein sequence | MKRSTIIFIL LSISFGGFSQ QVQWAFNVLE HSSQRGSRDY AAVQAVGVPN ALPTLGESVR
AWEPKQNEKE SYIKVGFLKP MIPKQVIIRE SFNPGHITAV YAYDAAGKEF LLAETSTGYL
SPNGLYHIST KEITFNVLAV KVVLAGKGDV IGIDAIGMTT TDKHFVIKQN ENDLIKSNMV
ATKMSDSVNS NYMEIGPLVS PDGQTLYFSR SGDPADMGGK KDIEDIWYSR WDASTKSWGK
AHNMGCPLNN EEPNFINSIS PDGNTVLLGN SYYEDGTMSD GVSITHKTAT GWSKPERLII
EDEDRNKSEM VSYFMSNSQK ILMISNNRKG DSYGKNDLYV SFLKADNTWT KPLNLGNKIN
TDVIEDAPFL ASDDKTLYFT SQGHGGYGGS DIYMSKRLDD TWQNWTTPEN LGPVVNSAHD
ESFFSLSASG KQVFFTSQVA ADSRDVDMYV LELPPMLSPE PVLLVHGHVY DSKTKQPVKG
VRVTFENLTT AKEVGIASSN YDSATYKIVL PAGAKYGYLA EKEGYVSINE NIDLTDMKAY
KEYEKDLYIT PIETGQVVVL NNVFFDFNKY ELKSESYPEL DRLVTLLKNN NAMKIEISGY
TDSIGTKSYN DKLSGRRAQA VATYLITKSA IDKSRITVKA FGEENPVTSN KTAKGRELNR
RVEFKITNK
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