Gene Meso_3443 details

Gene Information

• Locus tag: Meso_3443
• Symbol: rimM
• ID: 4181488
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chelativorans sp. BNC1
• Kingdom: Bacteria
• Replicon accession: NC_008254
• Strand: +
• Start bp: 3722544
• End bp: 3723182
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 638069337
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_675979
• Protein GI: 110635771
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.609284
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAACCC ACATGGCCAA GCCAAAAGCT CCAGCAGGGA TCGAGAACCC GGTACAGCTC 
GCCGTGATCG GCGCAGCCCA CGGCATCAAA GGGGAAGTCC GGGTCAAGAC CTTCACAGAG 
GATCCGATGG CGCTCGGCAG CTATGGCCCG CTCCATATGG TGGACGGGCG GGTGCTCCAA 
GTGGCGGCCA TACGGCCAGC GAAAGAGGTA GTCATCGTCC GTTTCAAGGG CGTTGATGGC 
CGCAACGCGG CCGAGGCTCT CAATGGCGAG GCGCTCTTTG TGGATCGGTC GGCACTGCCG 
GAAAAGCTCG AAGAGGAGGA GTTCTATTAC GCCGATCTCA TCGGCATGGC GGTGCTGGAC 
GAGAAGGGCG AAAACCTAGG GCGCGTGGTG GCGGTCCACA ATTTCGGCGC CGGCGATCTC 
CTCGAGTTCA GGGAAAATTC CGGACCGACC GTAATAATCC CCTTCACGCG AGACGCAGTG 
CCCGATATCG ACCTTTCCAA CAACACGATC CGCATCGACA GCATCACCGC CGGGCTCGAC 
AATGCGGAAC TCTCTGGGGA GGAGGATGAG GCCGAAGGGC CTGAATCAGC CCGCGGTTCG 
CGTCCGCGCG GACCGAAGTC GGCCGGAGAA CCCCGTTGA 

 

Protein sequence

METHMAKPKA PAGIENPVQL AVIGAAHGIK GEVRVKTFTE DPMALGSYGP LHMVDGRVLQ 
VAAIRPAKEV VIVRFKGVDG RNAAEALNGE ALFVDRSALP EKLEEEEFYY ADLIGMAVLD 
EKGENLGRVV AVHNFGAGDL LEFRENSGPT VIIPFTRDAV PDIDLSNNTI RIDSITAGLD 
NAELSGEEDE AEGPESARGS RPRGPKSAGE PR