| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4272 |
|---|
| Symbol | |
|---|
| ID | 4176062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 5142333 |
|---|
| End bp | 5143457 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638057309 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_663825 |
|---|
| Protein GI | 109900570 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAC TTTCTGGTCA ACCAGAAGCA AAAAGAACCG AACCTGCGGT TTGGTTACTT
TTCTTAGGCG TTTTATACAC GCTCTATTTC ACCCAAAGTC TATTGATGCC TCTGGTCGTT
ACTTCACTTA TTGCACTGCT TTTGAGCCCA CTTGTCGCTG CGCTACAAGG TTTACATATT
CCTCGAACAG TGTCTGCATT TTTACTTGTT TCAACCTTGA TAGCGCCTTT TACGTTTCTT
GGCGCAGAAC TAGCTGAGCC AGCACAAAAA TGGGCCAAGT TAGTACCGGA GTTGACCCAA
CATGTTACCG AGCAACTCGA TTCGATCAGT GATGCTATGG AAGGTGAAAA CGAAAGTAAC
CTACCGGCTA AAGCCGATGA TGAAGAATTT AGCTTCTTCG GTTTATTCAA AAATAAGGCA
GAACAGAGGC CCGTTGAGAA AGATGAAAAC GTGATGTCTC AACGCTTAAA GCAAGGGGGG
TTAGAGATCA TGCTCTCTGT GCTATCAAGT ACCCCTTTAA TATTGGCTCA GCTAATGACA
GGGGTTATTT TAACACTTTT CTTGCTTATT TTTGGCCCTC AACTATTTGA AGCGTTTATC
CAGCACTTTC CGAAAATTAC CGATAAAGAT CAAGCGCGAT GCCTAGTGGC GACCATTCAA
AAAGAATTAT CTCGCTACAT AGTGACCGTC AGTATTATCA ACGCCGGTCT TGGTCTGAGC
ACGGCTTTTG TGTTGTACTT AATCGGCATT GAAGATGCGC TTCTTTGGGG GGTATTGGCA
GGTCTATTAA ACTTTATTCC ATATGTAGGT TCACTTATTG GAGCAACCAT TTTAACCCTA
GCAGGACTGG TTCAGTTTGG CGTGCAGGTG ACTGCGCTTA TTCCTCCAGC CGTTTACTTT
GGGTTAAATC TTATTGAGTC TCAGTTTATT ACTCCTACTG TGCTAGGTCG TAATATGCAG
CTTAATCCGC TTATCGTTGT CTTGTGGTTG TTGGTCTGGG GTTGGTTGTG GGGTGCAGTC
GGCGTTTTGT TAGCAGTACC TTTATTAGTG TGTATAAAGT TAACACTGGA CCAATTAAAT
ATCTGGACTC ACTGGTTAAA AATCATCGAA GCGAAAAGCC ACTAA
|
|---|
| Protein sequence | MATLSGQPEA KRTEPAVWLL FLGVLYTLYF TQSLLMPLVV TSLIALLLSP LVAALQGLHI
PRTVSAFLLV STLIAPFTFL GAELAEPAQK WAKLVPELTQ HVTEQLDSIS DAMEGENESN
LPAKADDEEF SFFGLFKNKA EQRPVEKDEN VMSQRLKQGG LEIMLSVLSS TPLILAQLMT
GVILTLFLLI FGPQLFEAFI QHFPKITDKD QARCLVATIQ KELSRYIVTV SIINAGLGLS
TAFVLYLIGI EDALLWGVLA GLLNFIPYVG SLIGATILTL AGLVQFGVQV TALIPPAVYF
GLNLIESQFI TPTVLGRNMQ LNPLIVVLWL LVWGWLWGAV GVLLAVPLLV CIKLTLDQLN
IWTHWLKIIE AKSH
|
|---|
| |