| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4255 |
|---|
| Symbol | |
|---|
| ID | 4176045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 5122047 |
|---|
| End bp | 5123531 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638057292 |
|---|
| Product | ketol-acid reductoisomerase |
|---|
| Protein accession | YP_663808 |
|---|
| Protein GI | 109900553 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0059] Ketol-acid reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00465] ketol-acid reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATT ATTTCAATAC ATTATCTTTA CGTCAGCAAC TTGACCAAAT TGGTCGTTGC
CGATTCATGC AGCGCAGCGA ATTTTCAGAA GGCTGTGATT TCCTTAAAGG CAAAAAAATA
GTCATCGTAG GTTGTGGCGC TCAAGGTTTA AACCAAGGCC TTAACATGCG AGATTCTGGT
TTGGATGTTG CTTATGCGCT TCGTCAAGCC GCTATCGATG AAAAACGCGA TTCATTCCAA
CGTGCAAGCG GTAATGGTTT TACTGTTGGT ACGTACAAAG AGCTTATTCC AAGTGCTGAT
TTGGTTTACA ACCTAACGCC TGATAAACAG CATTCAAGCG TTGTTGAAGC TATTATGCCT
CTTATGAAAG AAGGTGCTTC ATTAGGTTAC TCTCACGGTT TTAACATCGT TGAAGAAGGC
CAACAAATTC GTTCAGACAT CACAGTCGTG ATGTGTGCAC CAAAATGCCC AGGCACTGAA
GTACGTGAAG AATACAAGCG TGGATTCGGT GTTCCGACAT TAATTGCGGT TCACCCTGAA
AACGATCCTC AGCAACAAGG TTGGGATATC GCTAAAGCAC TCGCAAGCGC AACAGGCGGC
GATCGTGCAG GCGTACTTGA GTCTTCATTC GTAGCCGAAG TTAAGTCTGA CTTAATGGGC
GAGCAAACGA TCCTTTGTGG TATGCAACAA GCTGCGGCCG TTCTTGGTTA CGAGAAAATG
GTGGCTGACG GCATCGACCC CGCTTATGCC GGAGCGTTGA TTCAGTTTGG CCTAGAAGCC
ATCACCGAAG CACTTAAAAT CGGTGGCGTG ACCAACATGA TGGATCGCCT CTCGAACCCA
GCTAAAATCA AGGCATTTGA TTTATCTGAG CAACTTAAAG ACATGTTAAA GCCACTATTT
GGCAAGCATC AGGACGATAT CATCAGCGGT GAATTTTCAC GTACTATGAT GGAAGATTGG
GCCAATGGTG ACGCTAACTT ATTGAAGTGG CGTGAAGAAA CAGGCCAAAC AGGTTTTGAA
AATGCGCCTG AATACAATGG TAAAATCGAT GAGCAAGAAT TCTTCGATAA CGGTGTATTC
ATTGTGGCCA TGATCAAAGC GGGTGTTGAG TTAGCATTCG ACGTTATGGT TGAAGCGGGC
ATTTTACCTG AGTCTGCTTA CTACGAGTCA TTGCATGAAA CGCCGCTCAT TTCTAACACG
ATCGCCCGTA AGCGCTTGTA CGAAATGAAT GTCGTTATCT CTGATACTGC AGAATATGGC
AACTACCTGT TCGCTAACGC GGCCATTCCT TTATTGGCGG ATAAATTAAT GCCAAGCATT
GGTACAGAGT TAATTGGTAA GCCTTTCGCT GCAGCTAGCA ATAGCGTTGA CAATAAAACG
CTTGTAGCCG TTAACAAAGC CATTCGTGAG CATGGCGTTG AAAGTGTAGG CGATACACTA
CGCGGTTACA TGACTGACAT GAAAGCCATA GTTGAAGCGG TGTAA
|
|---|
| Protein sequence | MANYFNTLSL RQQLDQIGRC RFMQRSEFSE GCDFLKGKKI VIVGCGAQGL NQGLNMRDSG
LDVAYALRQA AIDEKRDSFQ RASGNGFTVG TYKELIPSAD LVYNLTPDKQ HSSVVEAIMP
LMKEGASLGY SHGFNIVEEG QQIRSDITVV MCAPKCPGTE VREEYKRGFG VPTLIAVHPE
NDPQQQGWDI AKALASATGG DRAGVLESSF VAEVKSDLMG EQTILCGMQQ AAAVLGYEKM
VADGIDPAYA GALIQFGLEA ITEALKIGGV TNMMDRLSNP AKIKAFDLSE QLKDMLKPLF
GKHQDDIISG EFSRTMMEDW ANGDANLLKW REETGQTGFE NAPEYNGKID EQEFFDNGVF
IVAMIKAGVE LAFDVMVEAG ILPESAYYES LHETPLISNT IARKRLYEMN VVISDTAEYG
NYLFANAAIP LLADKLMPSI GTELIGKPFA AASNSVDNKT LVAVNKAIRE HGVESVGDTL
RGYMTDMKAI VEAV
|
|---|
| |