| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4204 |
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| Symbol | secF |
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| ID | 4175993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 5064367 |
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| End bp | 5065353 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638057240 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_663757 |
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| Protein GI | 109900502 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGCAA ACACATTGAA AAATGAAACC AGTACGCAAG AAGCGACAAA CACAATCAGC
CAATCTACGG GAGTCCATTC ACCCATGGCC ATGTTCAGTA AGGTACGTTT GGCTGGTTTT
TATCTCGCCA TCTCATTGAT GCTGCTTTCG GCTATCGGCT TAGGCTTTAA AGGGCTGAAC
CTCGGGCTAG ATTTCACGGG TGGCTACATG ACTGAGTTCA CTACCTCGCA AAGTATCAAT
AAAAAGCAAA TGCAAGACCA GCTTGCCACG CATCTAACTG GCGATTTTGA GTTAAACAGT
AGTGGGGCAA ACACCCAATG GACGATTCGC CAAGCTGATG GTGCCAACCA TGTCATCGAC
AAAGACTGGC TTAACAACTT CGCGGCGCAA TCGGGCTATG ACATCAGCCC ACAAGACTCG
GTTTATATTG GCTCACAAGT AGGCTCTGAG CTGATTGATA ATGGCGGATT GGCTTTGATC
GTCGCTGCAA TTGCCATGAT GATATATCTA ACATGGCGCT TTGAATGGCG CTTAGCCTGT
GGCTCGCTCA TGGCGTTAGT GCATGATGTA CTCGTGGTTT TAGGGTTATT CGCCTGGCTG
GGATTACCGT TTGATTTGAC GGTATTGGCG GCCGTGCTGG CCATCATTGG TTACTCGCTG
AATGACTCTA TTGTCATCGG TGATAAGTTA CGTGAAGTGA TGCGCGCGAA AACCAATATG
AGCATGAGTG ACATAGTCGA TACAGCCGTA AAATCGACCT TAACACGCTC ACTAATTACC
TCCGGTACTA CACTCGCTAC CATAGGCGCC ATCTGGATAT TCGGCGGTCA GCCGCTACAA
GGTTTTGCTA TTGGGCTGTT CGCTGGCGTG GTATTTGGTA CCTTGTCGTC TATTGCTGTA
TCGGCAACGA TCCCTCAGCT TATCGGCTTA AATCCTGAGT TTTATCAGCA CAGAGCCCAA
GAGTTGTTGC TTAACGATGA ACCGTAA
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| Protein sequence | MSANTLKNET STQEATNTIS QSTGVHSPMA MFSKVRLAGF YLAISLMLLS AIGLGFKGLN
LGLDFTGGYM TEFTTSQSIN KKQMQDQLAT HLTGDFELNS SGANTQWTIR QADGANHVID
KDWLNNFAAQ SGYDISPQDS VYIGSQVGSE LIDNGGLALI VAAIAMMIYL TWRFEWRLAC
GSLMALVHDV LVVLGLFAWL GLPFDLTVLA AVLAIIGYSL NDSIVIGDKL REVMRAKTNM
SMSDIVDTAV KSTLTRSLIT SGTTLATIGA IWIFGGQPLQ GFAIGLFAGV VFGTLSSIAV
SATIPQLIGL NPEFYQHRAQ ELLLNDEP
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