| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4164 |
|---|
| Symbol | |
|---|
| ID | 4175953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 5011843 |
|---|
| End bp | 5012691 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638057200 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_663717 |
|---|
| Protein GI | 109900462 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.045816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACTT TCACAAAAAT AAAAGCCATT AAAGATACCC TTTCTAATAG CGAATTAAAG
CTCGCTAAAT TTGTACTTAG TTCATCAAAT GCAGTAAGGG ATCTGTCATC TCAAGAACTC
GCGAATGTCG TTGGCGTCAG TCAATCTAGT GTGGTGAAAT TCGCCCAAAA GCTTGGATAC
AAAGGGTATC CAGCGTTCAA GCTAGGGGTA ATAGACGCAT TAAATTCAAC TGCGAGTGAG
GGCAATCTAC ACGGTAAAAT CACCCTCAAT GACAGCTTCA AACAAGTGTC AGAAAAGCTA
CTTAGCAGCA AAGTCGCAGT ATTAACCGAG ACTAAAAACC TTAATGAAGA AGCCGCGTTT
CACCAAGCTG TGGAATTACT CAAATCAGCT AAGCGCATTT TGATTTGTGG CTTAGGTGGT
TCAGCTCTGG TAGGGAAAGA CTTCTCCTAT AAGCTGCAAA AACTTGGCAT GTTAGCCATT
GAAGAGCCTG ATATGCACGC CCAGTTGGCC TTTGCTGCTA CCTTGTCTGA AAACGATTTG
GTGTTTGCCA TCAGCGAATC CGGCAGTACC CGTGAAATTG TCAATGTAGT GAAACAGGCC
AAGCAAAACA GCTGTAAAGT GATCACGGTA ACTCGCTATG GCGCAACGCC GGTATCTGAT
CTTGCAGATA TCAAACTATA TTCAGTAGCA GAAGAAGAGT CAGCGCGTTT GTCATCGATA
ATGGCCCGTA CTGCTCAAGA GTTTATTATC GACATATTGT TTATTGCGAT CACTCAATCA
TCAAGACAAG GTCGCCAATT ACTTGAGAAA ACGAACTCAG TGGTCAGTGA CTTTAGGCAA
TCTTCTTAA
|
|---|
| Protein sequence | MSTFTKIKAI KDTLSNSELK LAKFVLSSSN AVRDLSSQEL ANVVGVSQSS VVKFAQKLGY
KGYPAFKLGV IDALNSTASE GNLHGKITLN DSFKQVSEKL LSSKVAVLTE TKNLNEEAAF
HQAVELLKSA KRILICGLGG SALVGKDFSY KLQKLGMLAI EEPDMHAQLA FAATLSENDL
VFAISESGST REIVNVVKQA KQNSCKVITV TRYGATPVSD LADIKLYSVA EEESARLSSI
MARTAQEFII DILFIAITQS SRQGRQLLEK TNSVVSDFRQ SS
|
|---|
| |