| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4143 |
|---|
| Symbol | |
|---|
| ID | 4175932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4979662 |
|---|
| End bp | 4980795 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638057179 |
|---|
| Product | major facilitator superfamily permease |
|---|
| Protein accession | YP_663696 |
|---|
| Protein GI | 109900441 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC TGGCGGATAT TCTCATATCC GCTAAAACTA CCTTACCTTG GGTGCTCACT
AGCATAGGTG CACCGAGTTG GATGATTTCT CTGTTAGTCC CCATTCGAGA ATCTGGCTCA
CTAATTCCCC AGTGGCCGCT AAAGCATCGA ATCGAACGCT ACGTTAAACG CCAACACGTA
TGGCGTGTGG GTGTGTTGGT GCAAGCATTG GCGATACTGG GCATGGTGCC GGCAGTGGCG
ATGTTAGATG CTTTTTACGC TGGCTCCGCT ATTCTCATTT TGTTGGTGAT ACTCAGTCTG
GGGCGTGCTC TATGTTCGTT GACCATGAAA GATATGGAGG GCGTGTTAAT CGAAAAGGGT
CGCCGGGGCA AATTAGTAGG GATAGCCAGC GGAATTTCTG GCTTGTTGTC TTTGCTCAGC
GCCGGGGCAC TCATTCTAGG TAAAGAGCAG TTTGAACAAG TTTGGTTGCT GTTTATCGTG
GGGTTCGCCA GCATATTGTT TATCGCAACG CTACCCTTAT CGTTGGCGTT AAACGCTGAG
GTCAAATCAG AAAGTGATCG CGGCGGGGAC TCTTTTTTGC AAACCCTGAA AGGGGACGCT
GCATTAGTGC ACTTAATCAT TAGCCGTTGT TTATTACTGC ATAGCGCTTT AATAGCCCCA
TTCTTCGTTA GCATCACCAC AAGTCAAGAC GATACCTTTC AGCTACCTTA TTTTATCGCG
GCCAGCTCAT TAGCCGCGTT TTTATCTTCC TATGTCTGGG GTTCATGGTC AGACAAAAGT
GCAGTGCTGA CTATACGTAT TGCCAGTGTG ATATGTGTGG TAGCAGGCGG AGTGTTCTAT
TTTTGCTACC AGATGGGTTC GCTTTGGCTC AACGTTGGTT TATTCTTTTT GCTCTCGGTG
GGATACGCAG GAGTTAGAAC GGCGCGCAAA ACCTACTTGC TGGATATTGC CAACGGCGAT
ACCCGCACCC AATATGTTGC GACCGCCAAT ACGGTTGTCG GTTATGTGTT GCTCGCTTTT
GGCGGTTTTT ATGCTGTGGT TTACCCGATG ATAAATGAAC ACATTATTGC TTTGATGACA
GGCTTTTTGA TCCTTGGTCT TGCTCAAAGC TACTGGCTTA AAAAAGAGAA GTAG
|
|---|
| Protein sequence | MTKLADILIS AKTTLPWVLT SIGAPSWMIS LLVPIRESGS LIPQWPLKHR IERYVKRQHV
WRVGVLVQAL AILGMVPAVA MLDAFYAGSA ILILLVILSL GRALCSLTMK DMEGVLIEKG
RRGKLVGIAS GISGLLSLLS AGALILGKEQ FEQVWLLFIV GFASILFIAT LPLSLALNAE
VKSESDRGGD SFLQTLKGDA ALVHLIISRC LLLHSALIAP FFVSITTSQD DTFQLPYFIA
ASSLAAFLSS YVWGSWSDKS AVLTIRIASV ICVVAGGVFY FCYQMGSLWL NVGLFFLLSV
GYAGVRTARK TYLLDIANGD TRTQYVATAN TVVGYVLLAF GGFYAVVYPM INEHIIALMT
GFLILGLAQS YWLKKEK
|
|---|
| |