| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4088 |
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| Symbol | |
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| ID | 4175877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4911731 |
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| End bp | 4913353 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638057124 |
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| Product | hypothetical protein |
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| Protein accession | YP_663641 |
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| Protein GI | 109900386 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
[COG2453] Predicted protein-tyrosine phosphatase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTATCG TTAAGTATTA TTTAGCAGGT GCGCTGGCTG CACTAGCCTT GGCATACTTC
AGCCCAACTC TATTTGTCAG CGTTCCTCTG GTTTGGATAA GCCTATCTCT GCTTGCTGTG
GGTGCAGCAT ACTTATTACA AAAGCCGGCC ATTTTTAGAA AGAAGCAAGA CGGTTCAATT
CCCTTTTATG TGCGCTGGTT ATTTATACCC TTTCTCCTTG GCGTTCAGCT CTACAACAGT
TGGGCGCGTA AAAACGACAA AGTGCCCGCC ATTCAAAAAA TAGATGATGA TTTATTTTTA
GCGTGCCGCT TATTTCCAAG CGATGTTGCT TACCTTCAAG AGCTCAACGT CAAAGCTATT
TTAGACGTTA CCGCCGAATT TGACGGACTA GATTGGACAG CCACCTCAGA AGACTTAGCC
TACTTAAATG TTCCTGTGCT TGACCACCAA AGCCCTTCGG AAGAGGATTT AGTTAGCGCA
GTAAACTGGA TTGAGAATCA TCGTCGCGCG GGACGCGGTG TGGTTGTGCA TTGCGCCCTA
GGTCGTGGCC GCTCGGTATT AGTAATGGCT GCGTATTTGC TGAGTAAAGA CCGCACATTA
AGCGTACGCC AAGCCATTGA AAAAATTCAA GATGTGCGAG AAACCGCGCG TCTCAACTCC
CACCAGCTTA GGGCGCTTTG CAAAATTTTT GATAAAGGTG TGCTCACGCC CAAAGCCCCA
ACATGGTTAA TTGCAAACCC AGTATCCGGT GCCGGTAAAT GGCCCGAGAA TCGTGAATTT
ATCGTACAAA GACTCAGTGC GTCTATGCAG CTAAAAGTGG TAGAAACCTC ACCAGACATT
AGCGCCTATG ACCTAGCGCA ACAAGCGATT GAAGCTGGCG CCACGACTGT GATTGCGTGT
GGCGGCGACG GTACATTAAC CGAGGTCGCA TCGGCTGTGG TGAATACTCA AACTCAATTT
GCCATTATCC CCATGGGAAC GGCAAACGCC TTAGCCCACG CGTTATTTGG CAGTAAAACC
AAAGTCATGC CGGTAGAGGT CGCTTGTGAG CATATTGAAA ATGGCATAGC GACCAAAATT
GATACCGCTA GCTGTAACGA TAAACTTGCG TTACTGGTGA CCGCCGTCGG CTTTGAACAG
AAAATGATTG AAAACGCAGA CCGGGAGGAG AAAAACGAAG GCGGCCAAAT GGCTTATATC
AGAGCCCTGT GGGAAGCCGT TAATGTGAAT GAATCTTTGC AGCTCGACGT TACCATCGAC
GACGCCCCCA CACAGCAGAT GTCAGTGTGC AGTTTAGTGG TGGCCAATGC TGCGCCATTT
ACCACAGTAT TAGCCCAAGG TGGCGGCGAA CCGAATGTGC GAGATGGCTT TTTGGATTTA
ACCTGGTTAC CCGGTGATGC CACATTCGGG GATCATATGT TCAGTTTGTC TGAATTAATT
GCCCCGGGCT TATTTAACTC AGTAGAAGAG AAAAGCGTGC GTCACCAGCG CATCACAAAA
ATTCATATCA AGGGCGCCGG CCCGCTTAAC TATGTGATTG ACGGTGAAAC CTATCAAGAC
GATGAATTAT TCATCGAGGT AAACCCTGCA TCACTGAGTA TACTTATCGC CCCTGAGCCG
TAG
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| Protein sequence | MFIVKYYLAG ALAALALAYF SPTLFVSVPL VWISLSLLAV GAAYLLQKPA IFRKKQDGSI
PFYVRWLFIP FLLGVQLYNS WARKNDKVPA IQKIDDDLFL ACRLFPSDVA YLQELNVKAI
LDVTAEFDGL DWTATSEDLA YLNVPVLDHQ SPSEEDLVSA VNWIENHRRA GRGVVVHCAL
GRGRSVLVMA AYLLSKDRTL SVRQAIEKIQ DVRETARLNS HQLRALCKIF DKGVLTPKAP
TWLIANPVSG AGKWPENREF IVQRLSASMQ LKVVETSPDI SAYDLAQQAI EAGATTVIAC
GGDGTLTEVA SAVVNTQTQF AIIPMGTANA LAHALFGSKT KVMPVEVACE HIENGIATKI
DTASCNDKLA LLVTAVGFEQ KMIENADREE KNEGGQMAYI RALWEAVNVN ESLQLDVTID
DAPTQQMSVC SLVVANAAPF TTVLAQGGGE PNVRDGFLDL TWLPGDATFG DHMFSLSELI
APGLFNSVEE KSVRHQRITK IHIKGAGPLN YVIDGETYQD DELFIEVNPA SLSILIAPEP
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