| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4084 |
|---|
| Symbol | |
|---|
| ID | 4175873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4908649 |
|---|
| End bp | 4909572 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638057120 |
|---|
| Product | formate/nitrite transporter |
|---|
| Protein accession | YP_663637 |
|---|
| Protein GI | 109900382 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2116] Formate/nitrite family of transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATG ACTTAGAGCA CGGCGAGCAC GATCATGAAG CCCGCATCGT TTCCACCTCA
GGAGACCTCT TGTTTAACGA AAGCGCTAAA GAGCGAACCA AAGAGCGTAC TCGTGAAAGC
CAGGAATATG CTTCCGTCAT AGTGAAGCGT GTCGATGAAA CGTTCCGCCA TCCAGACGAC
ATACTTGAAA AAGCCATCGA TGAAGGCGTT GAGCAGTTAG CTCGGCCCGC CATGTCACTA
TTTATGTCTG CACTGGCCGC TGGCATGATT ATTTGTTTCA CCGTATTGGC GGTAGGTGTG
ATGACCACCA TAGTGGGCGA TCTCTCTACG GGGTTTAACC GTGTTTTGGT TGCCTTGGTC
TATCCGCTGG GTTTCGTAAT GTGTATTTTA AGCCGTACTC AGCTTTTTAC AGAACACACA
GCGACAGCTT TCTACCCAAT ATTGGACAGG CGCATCAAAA TTGTTCGTAT GTTCCGCTTA
TGGGGGATTG TTATCGCGGG GAACATGTTG GGCGGTGTAA TAAGCGCAGG CTTACTCGCC
GTGAGCGATG AAGTGATTCA CGCCAGCGAA GGCTACTTCA TTATCGCTGA GCATATTTTG
TCCTATTCCC CCCTTACACT GTTAACCAGC GCCACCCTTG CTGGTTGGTT AATGGCTTTA
GGCGCGTGGA CAATACTGTC AACGCATTCC ACCACCAGCC AGATATTGTG TATTTATATT
GTGACTTTCA TCATCGGGCT AGGTGGCTTA CATCACTCTA TCGCTGGCTC AGTAGAGCTA
CTCGTGGGCT ATTTCACTTC TGATCAATTG TCGTTCCTTG AGATGCTCAA AGCGCTCTCT
GTTGTATTGT TAGGCAATGC GATTGGCGGC TCGGTATTCG TTGCATTACT GAACTACAGC
CACATACGTA AGCTGAATAA ATAA
|
|---|
| Protein sequence | MSDDLEHGEH DHEARIVSTS GDLLFNESAK ERTKERTRES QEYASVIVKR VDETFRHPDD
ILEKAIDEGV EQLARPAMSL FMSALAAGMI ICFTVLAVGV MTTIVGDLST GFNRVLVALV
YPLGFVMCIL SRTQLFTEHT ATAFYPILDR RIKIVRMFRL WGIVIAGNML GGVISAGLLA
VSDEVIHASE GYFIIAEHIL SYSPLTLLTS ATLAGWLMAL GAWTILSTHS TTSQILCIYI
VTFIIGLGGL HHSIAGSVEL LVGYFTSDQL SFLEMLKALS VVLLGNAIGG SVFVALLNYS
HIRKLNK
|
|---|
| |