| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4061 |
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| Symbol | |
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| ID | 4175850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4884923 |
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| End bp | 4885684 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057097 |
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| Product | short chain dehydrogenase/reductase family oxidoreductase |
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| Protein accession | YP_663614 |
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| Protein GI | 109900359 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.185996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCAA GATGCAATGC ATTGGTTATT GGTGCGTCGG GCGGGTTGGG TCGTGAGGTC
TTCAGGCAAC TACTGGCGTC AGGTAAATAC GACACCGTGT ACGGCGTTTC GCGTCAGATA
ACCCAAAAGC CCGATGCTGA TATTTCACAT TTTGTGAAAG GCGCCAAATT AATCCAGCTC
GATTACACCA AAGAGTCAGT GGTGGCTGAT TTTTGTCACG GTCTTGCACA ACAAGGGCAG
TTTACGAGAG TTATTTGTTG TAGCGGGGTG CTACATGGCG TGAGTGATAA CGATGTTAGC
CTGCACCCAG AGAAACGATT AGAAGAGTTA TCAGCCGATA CATTAAGTGC GTATTTTTCC
ACAAACACAG TGCTTCCTGC ACTGTGGCTG CGATACCTTT TGCCTTTATT TAGAGGTCCG
TTGTCTGTCG ATGTGAGTTT TTTCAGCGCG CGGGTAGGCA GTATTAAAGA TAATAACTTA
GGTGGCTGGT ACGGTTATCG CGCGAGTAAA GCAGCGCTTA ACATGTTGAT AAAAACTGCT
CAGGTAGAAT ATCAACGGCG TGCAAAAAAT GTCACGCTGG TCTGTTATCA CCCTGGAACG
GTCGACACGC CCTTATCTAA GCCTTTTCAA AGCAACGTTA GACCGGAAAA ACTGTTCACC
AGCGAATTCA GCGTATCTCG CTTGTTGATG CATTTATCTA CTGTTCAACC AGATAAAGGC
CCTTATTTCA TCGATTGGGA CGGCAAAGAG ATCCCGTGGT GA
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| Protein sequence | MTARCNALVI GASGGLGREV FRQLLASGKY DTVYGVSRQI TQKPDADISH FVKGAKLIQL
DYTKESVVAD FCHGLAQQGQ FTRVICCSGV LHGVSDNDVS LHPEKRLEEL SADTLSAYFS
TNTVLPALWL RYLLPLFRGP LSVDVSFFSA RVGSIKDNNL GGWYGYRASK AALNMLIKTA
QVEYQRRAKN VTLVCYHPGT VDTPLSKPFQ SNVRPEKLFT SEFSVSRLLM HLSTVQPDKG
PYFIDWDGKE IPW
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