Gene Patl_3926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3926 
Symbol 
ID4175706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp4738169 
End bp4738759 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content49% 
IMG OID638056954 
Productcarboxymuconolactone decarboxylase 
Protein accessionYP_663480 
Protein GI109900225 
COG category[S] Function unknown 
COG ID[COG2128] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCATA TGCAGCCTTT ACCCAAAGAA ACCACACCTG AATTAGCAGA AGACTTCGCA 
ATCTTTGAAC AAATTTTAGG TTTTGTACCC AATAGTTTGC TAACGATGCA GCGCCGACCA 
GACATCGTAC GCGGTTTTGG GGTGTTAACC AAAGCGGTGA TGGCAAAAGA CGGCACGGTT 
GATTTAGGTT TCAAACGTCT ATTGGCACAC TTTTCAAGCC GAGCTGCAGG TTGCCAATAT 
TGTGAAGCGC ACTCCTTAAT AGCCGCTAAA ATTCACGGTA TTTCTGATGA AAAGGTCGCC 
GCAGTGTGGG AATACCAAAC CAGCCCACTT TATTCAGATG CAGAGCGCGT GGCCCTTGAT 
TATGCCCTTG CCGCAGGTTC AGTGCCGAAC GCGGTGGATG AGCCACTTAT GGCACGCATG 
CGAGCCTACT GGGAAGAAGA TGAAATCGTC GAAATTCTAG GCGCTATTTG TTTATATGGT 
TTTCTAAACC GCTGGAATGA TTCCATGGCC ACAGATTTAG AAGCTACGCC CAAAGCGCTA 
GGTGAAGACG TGCTCGCCCA AGGCGGCTGG ACAGGCGGCA AACACGTGTA G
 
Protein sequence
MAHMQPLPKE TTPELAEDFA IFEQILGFVP NSLLTMQRRP DIVRGFGVLT KAVMAKDGTV 
DLGFKRLLAH FSSRAAGCQY CEAHSLIAAK IHGISDEKVA AVWEYQTSPL YSDAERVALD 
YALAAGSVPN AVDEPLMARM RAYWEEDEIV EILGAICLYG FLNRWNDSMA TDLEATPKAL 
GEDVLAQGGW TGGKHV