| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3922 |
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| Symbol | |
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| ID | 4175702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4733082 |
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| End bp | 4735187 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638056950 |
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| Product | vault protein inter-alpha-trypsin |
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| Protein accession | YP_663476 |
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| Protein GI | 109900221 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1240] Mg-chelatase subunit ChlD |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGTTC CCCCTAGTGA AAACAACAAT GATGATCCCA GTCAACTTCA TCAAAAACGC
CGTTATCAGC TTAGTCCTCT GTTAAGTACC GATGTAAAAA TCGATATCAC AGGCATGATA
GCCAGAACCA AGGTTACTCA GCGTTTTCAT AACCCTAGTC AAGATTGGGT AAATGGGATT
TACGCCTTTC CTTTACCTGA AAATGCCGCC GTCGATCATC TCGATATGCA CATAGGTGAG
CGGAGAATCA AAGGCAAAAT CATGCCCAAT GCACAAGCCA AGGCGCATTT CGAGCAAGCT
AAAACTCAAG GTAGAAAAGC CAGCTTAATT GAACAACATC GCCCCAACCT TTTCACTAAT
ACTATTGCCA ACATTGGCCC AAATGAATCC GTCAGCATCA CGATTGAATA TCAACAGGTG
GTTGGGTTTG ACGAACAAAC ATTCAGTTTG CGCTTTCCCA TGACAATAAC ACCGCGATAT
TCACCCAATA ATGCGACTGA CAAGAGTACA GTCACCACGG TCAATACTCA GGGATGGGGG
CAAAGCGTGA CAGCAATAAG CCAGCAAATA AAAACAGCTG ATGAGCCCGC CAACCCGATT
CGCTTAAGCG TTGAGCTAGA CAGTGGCTTT GCACTGACCG CTGACGACAT TACTAGCGAA
CATCACCCTA TCAACATCAG CCAACAAGGA GAGAAAAACA GTGGCTATCA CATTGAATTG
GCTCAAGAGC ATATCGCCAA CCAAGACTTC GCTCTAACGT GGCAACCCGC CTTAAGCGAT
GCTCCCAGTG CAGCACACTT TAGCGAAACC CAAGGCAAGT ATCGTTATGG GCTAGTGATG
CTTACTCCAC CTGTGCAAGA TGCATATCAT TCCACTGGCG GAGCCGTCGC CCAACAGATG
CCCTCAAGAG AAGTGGTGTT CTTACTCGAC ACCTCAGGCT CTATGGCGGG GGAATCGATT
GTGCAAGCTA AGCGTGCTGT AGACTTTGCC TTAACGCAGC TGCGCCCAGA AGATAACGTC
AATATTATTC AATTTAATGA CGCCCCCCAA GCGTTATGGA AACGTGCCAT GCCCGCTACA
GCCAAACATA TTCAGCGCGC ACGAAATTGG GTGGCCAGCT TACACGCAGA TGGCGGCACT
GAAATGGCCC CCGCGCTAAC ATTAGCGTTA AACAAACCCT CACTCCATAG GGATGATAGC
GATTTACTTG GCTCCCACAA GCTTCGCCAA GTGGTCTTTA TCACCGATGG CAGTGTGAGC
AATGAAGATG CCTTAATGAG CCTGATTGAA AGTAAGTTGG CGGACAACCG TTTGTTTACT
ATCGGCATTG GTTCGGCGCC CAACAGTTAT TTTATGACCC AGGCCGCACA AGCTGGCCGG
GGCACCTTTA CCTACATTGG CGACATTCAA CAGGTACAAC ACAAGATGAC GGCATTGTTT
AACAAACTGA CTCGCCCTGT GATGCAAGAT ATACATATTG AATTTGCCCG AGAGACCGAG
TTTTACCCCA GTGTTATTCC TGACTTATAT GCCGCCCAAC CTTTGGTTAT TCATTACCGA
GTGCCGGTGA CACACCTTGA AAATGGCATG CAACTGCAAC AACCCGACAA TGCACTCAAG
GTGACGGGTT GGCAGTCAGC ACGAGCAGTA TCAAGCAAAC CTTGGTCAAT CCGCATGCCC
CTGAGCCCCA CAACCAAACG CGCCGGCTTA GGCGTTGCTT GGGCGAGAGA GAAAATCACA
CAACTCAGTC ATACCTTGCG CCGAGAACGC GACAGCGAAA TGCGCCCAAT GATGCGTAAA
AAATGGCAAG ACGGCATTAC AAATATTGCC CTTGAGCATC ATATTGTAAG CCAGTTCACT
AGCCTTATTG CCGTGGATGA AAAGCCGCCT ACCCCCCAGG ACGTTAAACC AGAGCACGAG
AACAGCAAAA ACACACCCAT TAACCACAAC GCGCCTGTTG GGTTTGCTAT GGCGAGGTCA
CACATGACTG GGTTACAAAG GGTTGGCCAA TTGCCGCAAA CGGCCACCAA TGCACCGCTG
CATATCACCT TAGGGCTGCT ACTTTTGGGA ATTGCACTGT TCGCGCGCCA AAAACGTTTG
TCATGA
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| Protein sequence | MGVPPSENNN DDPSQLHQKR RYQLSPLLST DVKIDITGMI ARTKVTQRFH NPSQDWVNGI
YAFPLPENAA VDHLDMHIGE RRIKGKIMPN AQAKAHFEQA KTQGRKASLI EQHRPNLFTN
TIANIGPNES VSITIEYQQV VGFDEQTFSL RFPMTITPRY SPNNATDKST VTTVNTQGWG
QSVTAISQQI KTADEPANPI RLSVELDSGF ALTADDITSE HHPINISQQG EKNSGYHIEL
AQEHIANQDF ALTWQPALSD APSAAHFSET QGKYRYGLVM LTPPVQDAYH STGGAVAQQM
PSREVVFLLD TSGSMAGESI VQAKRAVDFA LTQLRPEDNV NIIQFNDAPQ ALWKRAMPAT
AKHIQRARNW VASLHADGGT EMAPALTLAL NKPSLHRDDS DLLGSHKLRQ VVFITDGSVS
NEDALMSLIE SKLADNRLFT IGIGSAPNSY FMTQAAQAGR GTFTYIGDIQ QVQHKMTALF
NKLTRPVMQD IHIEFARETE FYPSVIPDLY AAQPLVIHYR VPVTHLENGM QLQQPDNALK
VTGWQSARAV SSKPWSIRMP LSPTTKRAGL GVAWAREKIT QLSHTLRRER DSEMRPMMRK
KWQDGITNIA LEHHIVSQFT SLIAVDEKPP TPQDVKPEHE NSKNTPINHN APVGFAMARS
HMTGLQRVGQ LPQTATNAPL HITLGLLLLG IALFARQKRL S
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