Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3901 |
Symbol | |
ID | 4175681 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4700925 |
End bp | 4703318 |
Gene Length | 2394 bp |
Protein Length | 797 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638056929 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_663455 |
Protein GI | 109900200 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCACC ATAAAAAATT TATTAAAACC ACATTATCCG CAGCAATTAT GCTGGCCTTA CCTATTACAG GTTTGGCAGA AGTAGAGAAA ATTGTTGTTA CTGCACAAAA GCGCAGTGAA CCATTGCAAG ATGTGCCGGT TGCCATAACT GCTTTTACTG GCGCAACGAT GGAAGCGTTA GGCATTACCG ATGCCAGTGA TTTAGTGGCT GTGACGCCAG GGTTAACCTC ATCAGCACAG GGTGGTTCAA ATAGAAATTA TTTTTTACGC GGTATCGGCA CCGGTGATTT TCATCTTACG GCCTCTCCTG CCGTCGGCCA ATATTATGAT GGCATTACCT TAACAAGTGG GTTCCAAGCA CGTGCGGCGT TATTTGATAT GCAGCGCGTA GAAGTTCTAA AAGGCCCACA AAACACCTTG TTTGGTCTCA ATACGACCGG TGGGGCCATA AACTATATTA CTAACAAGCC TGAAATTGAT GGTGGTACAA ATGGGAGCGT TAAAGTAAAG ATCGGCAGTG ACTCATTGAT TAATACTGAG TCAGCAATTG GTTTTGATAT TAGCGATTCG GTAGCTGCGC GGCTGGCCGT GATGACGAAC AAAAATGATG GCCCATTTAC ATCACTAAGC GATGGTCGCG ATTATGGTGA CGATGACATG AAAGCTGTCC GCCTTGGCGT GCTTTGGGCA CCAGTTGATG ACGCAAGCCT ACTATTTAAC GTAAACACGA TGCAGAGTGA GAACAACTCT ACTGCATCTG AATTGTTAGG TAGCAGAGCA CCAGATGGCT CTGGTGACGT GTGCGCCGAA TTCAACCGTG GCAATTTAGA CTTTGAGCGC AATACCGACT GTGTAGGGCG CGACGGTGGT GCCACAGGGG AACAACCGAC GGATCCATCA ACTGGCAGTT GGGATACCAT ATCCACTAAC TTCGGATTAG AAGATATCAA AACGAAAGGG TACTATCTCG CCTTTGACTA CGATTTTGAT ATCGGCACCC TCAGTTTGAT AAGTTCATTT GATAACTTAG ATTTTAAAGT GGCCACAGAT GTCGATGGCA GTGCAACTTT AGGTGCCCAT TTAACGCAAG AGGATGACCG CGATACTTAT CAACATGAGC TTCGCTTCGT CTCTGACGGT TTAGATGCGT TCAGATGGAT AGCAGGTATT TACTATCTTG ATCAGGATGC AGAGTCATTT ACTGGAATTC GCTCTCCTGG GATCGGAGGT GGTAATATAA TACCAAATGT ACAGCTGGCT CATAGCAAAG AAAACTTGGG GATCTATACC CAAGCCGAGT ACGACTTAAC CGACGATATA ACCATCACCT CAGGCCTTCG CTGGTCAGAC GAAAAAATAG TCGCAGACTA TTTACCTTCA TCACCTAACG CTCAAACTTT TGACAATAAA ATACCTTTAT TTTCAAACGA TATCGATGAG TTGGTCCGCT TACAAAACAA TGTTGAAAAC CCTAACCTTG ATGTAGATGG TTATGATATA CGGCGTCAAG TTCGTCAGAA TCTATCAAAC GAAGACATTG GATACACGGT TAAGCTCGAT TGGAAAGCCA CTGAAGACGC ATTACTCTAC GCCAGTTTAT CAAAGGGATT CAAAGGCGGC GCGGCTGATA TTCGCACAGC ATATGCATTA GTGCCGCCAG CCAATATATT GACCGGCTTA GAAGATGCTC GCCTTGAACC TGAATCACTT AAAGCATGGG AGGTTGGTTA CAAGAGTTCG TTCCTAAAAA ATAGCATTCA ACTCGATGCC GCTGTTTTTT ACTACACCTA CTTTAACAAA CAACAGTTTG TGACGGCCGG CGGTATACCT ACGTTAGCAA ACGCTCCTCA ATCTGAAATT AAAGGTTTAG ATGCCAACGT AAAATACGCA AACGACTACG GCCTTTTTCT AGATTTTGGT TTAGCACTAA TTGATTCTGA AATAACTGAC GCTGGCGAAG ACGAGCTATT TATTGAAGGA ACCGAGTTGG GGAACACCCC GAAATATTCA CTTTCGATGG TCGCTAAACA AGAAATCGAA TTTCAGAACG GAACACTACT CACGCTGATG GGAAATGTGA ATTACACGGA CGATGAGACC AAAGGCTCAA TTACCCGCGG CAGCAGTGAA CTCAAGGACT TGATCACCCA AGAAGCATTT ACGTTGGTGA ACATGAATGT GAAATACAGT TTTGGCGATG ACTTGCAATA TGCAGTGTCT CTTTACGGCA ATAATCTAAC TGATGAGCAC TTCTGTGCAA GCCTAGGCAC GTCAGACGGA AACAAAATAT ATGCAGATGG TATTTCTCCG GGCTCCCTAG GATATAACGT GAGATGTGTT GTAACGCGTG CGAGCACACG AACTTTTGGC TTGTCTTTCG GTTTAACCTT TTAA
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Protein sequence | MKHHKKFIKT TLSAAIMLAL PITGLAEVEK IVVTAQKRSE PLQDVPVAIT AFTGATMEAL GITDASDLVA VTPGLTSSAQ GGSNRNYFLR GIGTGDFHLT ASPAVGQYYD GITLTSGFQA RAALFDMQRV EVLKGPQNTL FGLNTTGGAI NYITNKPEID GGTNGSVKVK IGSDSLINTE SAIGFDISDS VAARLAVMTN KNDGPFTSLS DGRDYGDDDM KAVRLGVLWA PVDDASLLFN VNTMQSENNS TASELLGSRA PDGSGDVCAE FNRGNLDFER NTDCVGRDGG ATGEQPTDPS TGSWDTISTN FGLEDIKTKG YYLAFDYDFD IGTLSLISSF DNLDFKVATD VDGSATLGAH LTQEDDRDTY QHELRFVSDG LDAFRWIAGI YYLDQDAESF TGIRSPGIGG GNIIPNVQLA HSKENLGIYT QAEYDLTDDI TITSGLRWSD EKIVADYLPS SPNAQTFDNK IPLFSNDIDE LVRLQNNVEN PNLDVDGYDI RRQVRQNLSN EDIGYTVKLD WKATEDALLY ASLSKGFKGG AADIRTAYAL VPPANILTGL EDARLEPESL KAWEVGYKSS FLKNSIQLDA AVFYYTYFNK QQFVTAGGIP TLANAPQSEI KGLDANVKYA NDYGLFLDFG LALIDSEITD AGEDELFIEG TELGNTPKYS LSMVAKQEIE FQNGTLLTLM GNVNYTDDET KGSITRGSSE LKDLITQEAF TLVNMNVKYS FGDDLQYAVS LYGNNLTDEH FCASLGTSDG NKIYADGISP GSLGYNVRCV VTRASTRTFG LSFGLTF
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