| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3898 |
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| Symbol | |
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| ID | 4175678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4696338 |
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| End bp | 4698110 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056926 |
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| Product | Fis family transcriptional regulator |
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| Protein accession | YP_663452 |
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| Protein GI | 109900197 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACACAA CAGATAAAAG TGCCCTAGGC AATAGTGAAG ATGAAGCTAT TTTGCAGCCG
TTCAATCTTA TAAATGAAAA GGATAAAGTA CTTCCTGAGT TTCAGGATTT AAGTGACAGG
CTGCGTTTTA TTCCCGAGGA AGGCCGAGTG GTGTTGGGCG ATAATCGCTT GTTAATCGCC
AATTTGGCTT TTTTCTCAGT CATGCGTCAA GAGCACCTGA ATAGTTTTGG TGTTGAAAAA
TCACGAGGAA TTTTGACGAG AATGGGTTAC TCAGCAGGTT ATCAAGACGC TGAAGAAGTC
GCGACTCACT TTCGCTCTCA AGGAAATGCC TACGAAGTTT TGACCGCTGG CCCCACCTTG
CATGCTCTCA TGGGGTGGGC GTTAGTCGAG CCAATAGAAT TAGAAATAGA TGTAGCAAAT
GGGCACTACT ATGCAGAATT CATGTGGAAA GGCTCTGCTG AGGTCGCGCT GCACCTTAAA
AATAATGATA TAAGTTTAGA TCCCGTATGT TGGATGCAAA TTGGTTATGC CTCAGGATAT
GCTAGCCGTT TTATGGGTAA GCGGATTCTT TACAAAGAAG TTATGTGCAG CGGCATGGGA
GATAGTAAGT GTAAAATTAT TGGCCGCCCA GTTGAAAAGT GGGATGTGCC TACTCCCGAT
ATTTATTATA TGTATCCAGA GGACCTAAAA AGTACTGTCG ATCTTCGACC CACGCATCAT
ATTCCGCTCG CTGATACTCC TAAAGCAGAT AACGTAACAT CGTATGCTGG GCTAATTGGG
GCTTCTCCCG CATTTATTAA TACGCTGAAT CTGTTAAAGC GCGTTACAAA AACAAACGCT
ACCGTATTGT TTCTAGGAGA AACCGGTGTT GGCAAGGAGC GCTTTGCTCG CGCATTGCAC
GCGACCAGTA AGCGAGCAGA CGGCCCGTTC ATTGCGGTCA ATTGCGCTGC TATACCGGTG
GAACTCATTG AGGCTGAGTT ATTTGGTGTT GTGAAGGGCG CTTTTAGTGG TGCAACAAAT
TCTAGGTTAG GACGTTTCGA GCGAGCGGAC GGTGGGACCA TTTTTCTCGA CGAAGTAGGG
ACACTGGATC TCGCTTCTCA AGCCAAATTA CTCAGAGTGC TTCAGGAGCG TGAGTTTGAA
CGAGTCGGTG ACGAGCATGT GAGAAAGGTC GATATCCGCG TGATTGCGGC AACTAATGCA
GACTTGAAAA TAGATGTTAG TGAAGGTCGT TTTCGAGACG ACCTTTGGTA CCGCTTAAAT
GTATTTCCGA TTGAAATCCC TCCTCTTAGA GACCGAAGGG AAGATGTTCC TTTGCTTTTA
GAATACTTCT TAAACACCTT CAATACGTTG CATGAGCGCT CGGTCAAAGG TTATACGGAG
CGCGCACTTG ATGCATTAAT CTATTACCAA TACCCAGGCA ATATTCGGGA GTTAGAGAAC
ATGGTTGAGC GCGCAATTAT TTTGGCTGAA AATGATTCCG CACTCGATAT CCCAATGCTA
TTCACTGCAG AGAAACGTTC AAACATATCC TTACCTTTAA GCATGACCAA ACACGGACAC
TTGCGGGCGT CAAAGTTAGA AGAACAAAAT GATGGCCAAA TTGAACAGCT TTATGAATCT
GTTTTGTCGC AAGGAAAAAC TATGTCTGAA GTAGAATCAG CTATTGTTTT GATGGCAGTA
GAGCAAGCCG AAGGTAATCT CGCTGAAGCA GCAAGAAAAT TAGGGATGAC TAGGCGCCAA
ATTGAATATA AATACAGCAA ACTAAAATTG TAG
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| Protein sequence | MDTTDKSALG NSEDEAILQP FNLINEKDKV LPEFQDLSDR LRFIPEEGRV VLGDNRLLIA
NLAFFSVMRQ EHLNSFGVEK SRGILTRMGY SAGYQDAEEV ATHFRSQGNA YEVLTAGPTL
HALMGWALVE PIELEIDVAN GHYYAEFMWK GSAEVALHLK NNDISLDPVC WMQIGYASGY
ASRFMGKRIL YKEVMCSGMG DSKCKIIGRP VEKWDVPTPD IYYMYPEDLK STVDLRPTHH
IPLADTPKAD NVTSYAGLIG ASPAFINTLN LLKRVTKTNA TVLFLGETGV GKERFARALH
ATSKRADGPF IAVNCAAIPV ELIEAELFGV VKGAFSGATN SRLGRFERAD GGTIFLDEVG
TLDLASQAKL LRVLQEREFE RVGDEHVRKV DIRVIAATNA DLKIDVSEGR FRDDLWYRLN
VFPIEIPPLR DRREDVPLLL EYFLNTFNTL HERSVKGYTE RALDALIYYQ YPGNIRELEN
MVERAIILAE NDSALDIPML FTAEKRSNIS LPLSMTKHGH LRASKLEEQN DGQIEQLYES
VLSQGKTMSE VESAIVLMAV EQAEGNLAEA ARKLGMTRRQ IEYKYSKLKL
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