| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3878 |
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| Symbol | |
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| ID | 4175658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4673172 |
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| End bp | 4674596 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638056906 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_663432 |
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| Protein GI | 109900177 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.431493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATATCT TTCGAACATT ACATCGCAGT ATTTTGCTGC TCTTCGTCGT TGTGGTTGTA
TCCATCGTTA CCTTGGTGCA CTTTAGCGTG TCTAAAATCG TCGCGGAGCA AAGCCGTGCT
CAGCAGCAGT CTCATTCTCC AGCCGTAGAG CTCATTGTGC AGCAACTAAT GAAGCCGCTG
CATATTTCTG AAACCCTTGT TAAAGCAAAA GAATTGCAAG ATCTCATGGG CGCACAGAGC
GTTGATGAAG ACGCGGTGTT TGCTAGCCTT AAACGCTTGC ACCGTGAATT TGGCATGAAT
TTCTTTATCG CCAGTGAAAA GAGTCGTCGC CAATACTATT CCGATGGCAC AACCACGGAA
TTGGTTGAAG GGGACGTGAG TTGGTATTTT AAATATAAAG AGTCAGCTCA GAATGAAATA
GCCGATATTG GTAAGTGGGA AGACACTCAC TTTTATATCG ATTTAAAAGT CTTTGATGAA
GATCAGAATT TTCTTGGGTT TTTCGGTGTA GGTAAAAGCC TAAGAAGCTT TTTGGATATT
TTCGCGCGTT ACAAAGAAAC CTATGGTTAT GATTTTATCT TTGCGGACCA AGACAGAAAC
ATCACCTTGT CGTCTGATCC CAAATTAGTC GCGGCTAATT CAAAGTTTAC CAATTTAACG
GAATTGCCTT GGTTTAAAGA TTTGTCGGAA GAGGAGCAAG CGGGCTCGCT TAATAATTTA
TTGGTTAAAA TAAACGGCTA TGATTTCTTA ATCGCTGAAT TAAATATTCA ACCTTTTGAT
TGGACGCTGT ATTTAATGAC GCCTCTTGAG TCGCGTCAAA CAGAGATAAG CCGAGGCTTT
ATTTTCAGTA TAGTGACCTT GTTGGTGCTT ATTTTTGGCC TATTTTTGAT CATATATAAC
CTGTTGTATT ACTTCAAAAA AGACATGCAA AAGACCCGTC AAATAGACGT GTTAACTGAA
TTGCCCAATC GCGCTAGCAT GTCCCTTAAG TTCGATGGCT TGATGTACGA GAAATCTTCT
GTCAGCTTGG TGCTTATTAA TCTCGATAAT TTTAAATCTG TGAATGAAAC CCATGGGCGT
AAGGCAGGGG ATATTGTGTT ACGCCAAATC GCGTCAATGT TGCAGTTAGA GCTTAGAGAG
CAAGATATTA TTGGGCGATG GGGTGGTGAA GAGTTCTTGT TGCTACTGCC CAATACCGGC
CCTCATGAGG CGGTAGATGT AGCAGAAACC GTACGTAATC GCCTAGCCAA TATGACGATA
ACAACAGGTA GCATGTCTAT TCAAATGACG GCCAGTTTTG GTGTGTCGTT TACGGCTATC
CCTCGGGCCA TAAATGAAGT GATTGCCGCT GCCGACGATG CGCTTTTTGC CGCTAAGCGG
GAAGGACGAA ACGTGGTGCG CCTGCAATTG ATTGAGGAGC ATTAA
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| Protein sequence | MNIFRTLHRS ILLLFVVVVV SIVTLVHFSV SKIVAEQSRA QQQSHSPAVE LIVQQLMKPL
HISETLVKAK ELQDLMGAQS VDEDAVFASL KRLHREFGMN FFIASEKSRR QYYSDGTTTE
LVEGDVSWYF KYKESAQNEI ADIGKWEDTH FYIDLKVFDE DQNFLGFFGV GKSLRSFLDI
FARYKETYGY DFIFADQDRN ITLSSDPKLV AANSKFTNLT ELPWFKDLSE EEQAGSLNNL
LVKINGYDFL IAELNIQPFD WTLYLMTPLE SRQTEISRGF IFSIVTLLVL IFGLFLIIYN
LLYYFKKDMQ KTRQIDVLTE LPNRASMSLK FDGLMYEKSS VSLVLINLDN FKSVNETHGR
KAGDIVLRQI ASMLQLELRE QDIIGRWGGE EFLLLLPNTG PHEAVDVAET VRNRLANMTI
TTGSMSIQMT ASFGVSFTAI PRAINEVIAA ADDALFAAKR EGRNVVRLQL IEEH
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