Gene Patl_3835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3835 
Symbol 
ID4175615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4630197 
End bp4631147 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content43% 
IMG OID638056863 
Productdiguanylate cyclase 
Protein accessionYP_663389 
Protein GI109900134 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCAAGATA TGAAAGAGTT AGCTGAAATG CATTGGAAGC ACGATTTACT TGGCTCCATT 
GAAGTAGGCA TAGTGGTGGT TGACAGGGAA TATCTGGTAA TGGTGTGGAA CTTGTTTATG
GAGAACCACA GCAATATCGC GCCGAGTACG ATCCGAGGTA CATCTCTATT TACGCATTTT
CCTGAAATCG ACGAAACTTG GCTAAGGGCC AAGGTCGAAC CTGTTTTTTC CATGAAAAGC
CCGGTTTTTG TTATCTGGGA ACAGCGGCCT TTTCTTTTTC GGTTTGGGGC TAATCGACCT
ATTACTTCAC CCTCTAAGTT TATGTACCAA AACATCACCA TATTTCCATT GGCCTCTTTA
TCGGGGCAAG TAGAACAAGT GTGTATCGTG GTGTATGACG TAACCGATCA GGCTGTAAGT
AAGCAGGCAG TTGATGAACT CAACAGTGAG TTGCAGCGAT TAAGCCGAAT AGATGGTCTA
ACAGGCATTT TTAACCGCCG CTATTGGGAA GAGCAATTTA GTCGCGAATT TAAACGAAAT
TTGCGTAAGC CGAGTCAGTC GTCAGTCATC ATGTTAGACA TCGATAATTT TAAAAAAATC
AATGATAACT ACGGTCACCC TGCGGGCGAT GAAGTGATAC GCCAGCTCGC CAAGCTGATC
GAGGATGTTA CAAGAGAAAC AGACATCTGT GGCCGTTATG GCGGTGAAGA ATTTACAATT
TTATTACCCG ATACTGCCTC ACAAAATGTC ATGGTTCTTG CTCAACGTAT CAGAGAGACT
GTGGAAAATC TCAAAATTGA GTATGAACAG CAGACTATTT CCTTTACAGT CAGCTTAGGA
ATAGCGCAAT TTTCCCCTGT ATTTGAACAA CATATACAAT GGTTAGAAAG TGCTGATAAA
GCCCTATATC AAGCGAAAAT TAGCGGCCGT AATCGGGTGG TTATTGCTTA A
 
Protein sequence
MQDMKELAEM HWKHDLLGSI EVGIVVVDRE YLVMVWNLFM ENHSNIAPST IRGTSLFTHF 
PEIDETWLRA KVEPVFSMKS PVFVIWEQRP FLFRFGANRP ITSPSKFMYQ NITIFPLASL
SGQVEQVCIV VYDVTDQAVS KQAVDELNSE LQRLSRIDGL TGIFNRRYWE EQFSREFKRN
LRKPSQSSVI MLDIDNFKKI NDNYGHPAGD EVIRQLAKLI EDVTRETDIC GRYGGEEFTI
LLPDTASQNV MVLAQRIRET VENLKIEYEQ QTISFTVSLG IAQFSPVFEQ HIQWLESADK
ALYQAKISGR NRVVIA