| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3830 |
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| Symbol | |
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| ID | 4175610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4623847 |
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| End bp | 4626678 |
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| Gene Length | 2832 bp |
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| Protein Length | 943 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056858 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_663384 |
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| Protein GI | 109900129 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAA AACACTCATT CGCACTTGGT CAACGTTGGT TAAGCGATAC CCAAACAGAA
CTCGGCTTAG GGACTGTGGT ATCCGTTGAT AATCGCGCTG TCAGTTTGTT ATTCCCTGCC
ACGGGAGACA GTCGAGTGTA TGCCAAGCAA AGTGCTCCAC TAACCCGCAT TACATTTGGT
GAGGGCGACA ACATTACCAG CCACGAAGGT TGGGATATGA AGATCACTAA CGTTAGTGAA
CATAACGAAA TGTTGACCTA TACCGGTATT CGCCATGACA CCGAAGAAGA AGTGTTGTTG
AAAGAAACTT TTATTGATCA TCATTTTCAG CTAAACCAGC CAGAAAAACG CTTGTTTGCA
GGGCAATTTG ACCACCCCAA GTGGTTTGAT TTACGCGAGC AATGTTTGAA TCACCAATAT
AGCCACAGTA CGTCATCATT ATTGGGCTTT GTGGGAGCTC GGGTTGACTT GATCCCTCAC
CAATTGCACA TAGCAGCAGA AGTGGGCCGT CGTTTTGCAC CTCGAGTGTT ACTTGCTGAT
GAAGTAGGTC TAGGTAAAAC CATTGAAGCT GCGTTGATTA TCCATCAGCA ATTGCTAACT
GCCCGTGCTG AACGCGTATT AATTGTAGTG CCTTCAAGCT TGGTGCATCA ATGGTTGGTC
GAGATGCTGC GCCGGGTGAA CCTCGCGTTT TCCATTTTCG ATGAAGAGCG CTGCAGCGCC
ATGGCTGGTG AAAGTGGTAA CCCGTTCGAA TCTGAGCAGC TGGTTATTTG TAGTTTAGAC
TTTTTAACCC ACAACAGCAG CTATTACGAG TTAGCCATGC AAGCTCCATG GGATTTAATG
GTGGTTGATG AAGCCCATCA CCTGATTTGG AGTGAAGGCC AGCCGTCTCA AGAGTACCAA
GTGGTGCAAG GTTTAGCCCA AGTCACCAAA GGGGTGTTAC TGTTAACCGC CACGCCTGAC
CAACTTGGCC ATGAAAGTCA CTTTGCACGG CTGCGCTTGC TCGACCCAGC TCGCTTTCAC
GATTACCACA GCTTCGTAAA AGAAGAGCAG CAATACAGTA CTTTGGCTCA AGCTATTTCT
CCTTTGATGT CAGGTGATGC CTTAAGCGCG GATAACATTG CCGCTATTGA AGCCTTCGCT
AAAGACGAAG ATCTAGGTGA CATCAATGCT ATGTCTGCTA GGCAAAAAAC GCAGTTACTA
CATAATTTAC TCGACAGACA CGGTACAGGC CGTTTGCTTT TCAGAAACAG CCGCGCTGGC
GTCAGTGGCT TCCCTGATCG TAAATTGTAT AGCTACAGCC TAGAACAGCC AGAAGAGTAT
ATTGCCGCTC AAGATGAAGA TCCAACCAAC TTGTCGTTGC ATTTAACACC AGAGCGCAAC
CCAGATATGG TCAACAGCTG GTTCAATATC GACCCAAGAG TGGACTGGTT TATTGATAAA
CTACAAGAGC TTAAAGGCGA GAAAGTTCTC ACTATTTGTG CCAACGCAGG GACCGCATTG
CAGTTAGCTG AGGTACTGCG GGTAAAAGCC GGTACTCGGG CAACAGTGTT CCATGAAGGC
ATGGGCATAG TAGAGCGCGA CAAAGCCGCA AACTACTTTG CACAAACCGA AGAAGGCGCG
CAGGTGTTAA TTTGCAGTGA AATCGGCAGT GAAGGGCGTA ACTTTCAATT TGCTCACCAC
TTGGTGTTAT TTGATTTACC CCAAGTACCA GATTTGCTTG AGCAGCGTAT CGGTCGTCTT
GATCGTATCG GTCAAACCCA CGATGTGTGC ATTCATGTGC CTTATTTTGA TATGAGCGCC
CAACAAGTAC TACTTGACTG GTATCACCAG GGTCTGAATG CGTTTGAGCA TACTTGCCCT
ACAGGCATGA CTGTGTACGA GGAAACCCAA GAGTTACTGC ATAGCTGCTT GATGTTCCCA
ACCGACTTTG CCGCGAGCGA GAACTTAATT AACCAAACCG CAAGTTTGCA CAGACAACTC
AAAGAGCGGT TAGAACAAGG GCGTGACAAA CTGCTTGAGC TTAACTCGTC AGGTAAAGGC
CGAGTGGAAA AGCTGCAAAA AGAAATACTC GCCGCAGAAG ACTCACCCAC CCTTGAGCTG
TTCATGACAC GCTTATTTGA CACCCTTGGC CTTGCCCAAG AGGATAAAGA CGAAAGTTGT
TATATCCTTC GGCCCACTGA AACCATGGTA GCGACCTTAC CCGGCCTAGA TGAAGAAGGC
ATGACCATTA CCTACGAACG CACCACCGCG ACCCGTTTGG AGCATGTGAA CTTCTTTAGC
TGGGACCACC CCATGGTGCA ACATGCCATG GAGACCGTCA CTACAGAGAT CACAGGTAAG
AGCTCGGTAG CATTGGGAGA GGATAAATCC TTACCCGCTG GCGCATACTG GCTAGAGTGC
TTGTTTGTGT TATCGGGTAA AGCTGAAAAA TCATTGCAAC TTGACCGCTT CTTGCCCCCC
ACGCCTATAA AAATTTGTGT TGATACCACT AACAGTGTGG TTGAAAAACA ATTTACTAAG
CTGGACAAAG TACGCGGTAA AATGGGTAAT CAATTGATTA AAGCGTTGAC GCCTCAATTA
ACCAAAGCTT TAGCTGTAGC GCAAAGTCAA GGTGAAGCTG ACGCGGAAAA AGTCCGCAAG
CAGTGTCAAA AGCAAATGAA ATCCTTGCTG GGCGGTGAGC TAAAACGTAT GCAAAGCTTA
CAGAAAGTGA ACCCGTCAAT TCGCGATGAA GAAATTGCTC ACCTGCAGCA ACAAATCGAC
GACTTGAAAC TGGTTATTAG CGAAGCACGG GTGAATCTTG AAGCCATTAG ACTGATAGTG
AACAACCCCT AG
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| Protein sequence | MAQKHSFALG QRWLSDTQTE LGLGTVVSVD NRAVSLLFPA TGDSRVYAKQ SAPLTRITFG
EGDNITSHEG WDMKITNVSE HNEMLTYTGI RHDTEEEVLL KETFIDHHFQ LNQPEKRLFA
GQFDHPKWFD LREQCLNHQY SHSTSSLLGF VGARVDLIPH QLHIAAEVGR RFAPRVLLAD
EVGLGKTIEA ALIIHQQLLT ARAERVLIVV PSSLVHQWLV EMLRRVNLAF SIFDEERCSA
MAGESGNPFE SEQLVICSLD FLTHNSSYYE LAMQAPWDLM VVDEAHHLIW SEGQPSQEYQ
VVQGLAQVTK GVLLLTATPD QLGHESHFAR LRLLDPARFH DYHSFVKEEQ QYSTLAQAIS
PLMSGDALSA DNIAAIEAFA KDEDLGDINA MSARQKTQLL HNLLDRHGTG RLLFRNSRAG
VSGFPDRKLY SYSLEQPEEY IAAQDEDPTN LSLHLTPERN PDMVNSWFNI DPRVDWFIDK
LQELKGEKVL TICANAGTAL QLAEVLRVKA GTRATVFHEG MGIVERDKAA NYFAQTEEGA
QVLICSEIGS EGRNFQFAHH LVLFDLPQVP DLLEQRIGRL DRIGQTHDVC IHVPYFDMSA
QQVLLDWYHQ GLNAFEHTCP TGMTVYEETQ ELLHSCLMFP TDFAASENLI NQTASLHRQL
KERLEQGRDK LLELNSSGKG RVEKLQKEIL AAEDSPTLEL FMTRLFDTLG LAQEDKDESC
YILRPTETMV ATLPGLDEEG MTITYERTTA TRLEHVNFFS WDHPMVQHAM ETVTTEITGK
SSVALGEDKS LPAGAYWLEC LFVLSGKAEK SLQLDRFLPP TPIKICVDTT NSVVEKQFTK
LDKVRGKMGN QLIKALTPQL TKALAVAQSQ GEADAEKVRK QCQKQMKSLL GGELKRMQSL
QKVNPSIRDE EIAHLQQQID DLKLVISEAR VNLEAIRLIV NNP
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