Gene Patl_3820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3820 
Symbol 
ID4175600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4612317 
End bp4614254 
Gene Length1938 bp 
Protein Length645 aa 
Translation table11 
GC content45% 
IMG OID638056848 
Productalpha amylase, catalytic region 
Protein accessionYP_663374 
Protein GI109900119 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.166544 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATAA AACTTGAAAG TAAACGCACC TTAACGCGTA TTTTAGACGG CTTAGATTTA 
AGCGCTATGC CCAAACAAGA CCAAGCTATA TTTATCAGCC GAATGAATGA GCAGTTTCCT
CGACTATTCT CGCTACTCAT TGATATTTAC GGTCACAGGT ATGATTTTTT CTACTACCTG
CAACAGCTGA CACAAACCTT GGCCAACGGC TTTAGTAAGC GCTCGAAGGC GCAAAAGGCA
AAAGATCAAG CTAGATTGGC CGATCCTCAT TGGTATCAAG ATGAAAAGAT GTTGGGTATG
GCGTGTTATG TAGACTTGTT CGCGGGCGAC CTTAAAGGAC TCAAACAGAA GATCCCTTAC
TTAGTTGAGA CCGGCATCAC GTATTTGCAT TTAATGCCTC TATACGATTC TCCCGAGGGA
GATAGTGATG GTGGCTATGC CGTATCAGAT TATCGAAAGG TCAATAAGTC ACTTGGCACA
AATAACGATC TTGAAGCATT ATCGATAGCA CTCGCTGATG CCGGCATCAG CCTCGTATTG
GATTTTGTGT TTAATCACAC CTCGGATGAA CATAAATGGG CTGTCGCGGC CAAGTCAGGA
GACGAACACT TCCAAGATTA CTATTATATG TTTGATGACA AACGTATTCC TGACGAGTAT
GAGCAACATC TCAGAGAAAT ATTTCCTCAA GTTCGTCGAG GCAATTTCAG TTGGAATTCA
GATGCCCATA AGTGGGTTTG GACGACATTC AACAATTTTC AATGGGATCT AAACTACACT
AACCCCGCTG TATTTAATGC CATCACTGAC GAGATGCTCT ACCTAGCCAA TCTTGGTTGC
GAAGCGCTGC GCTTAGATGC GTTAGCATTT ATCTGGAAAG AAATGGGTAC CAACTGTGAG
AATCAAGATA AAGCGCACAG CTTGATCCAA GCATTCAACA GTTGTTTGCA AATCGCTGCT
CCTGCAGTGG TCTTTAAGTC TGAAGCCATA GTACATCCTG ATGAAGTCTT GAAGTACATC
GACAAACAAG AATGCCAGCT GTCTTACAAC CCCTTACTTA TGGCACTTAT CTGGAACACG
CTAGCCACCA GAGACACGCA TTTATTGACT GAATCTATGC AGAAAAGCTT TGAAATATCC
CCTGACTGCG CCTGGGTGAA TTATGTTCGT TGCCATGACG ATATTGGCTG GACATTTGAC
GATGCAGTAG CCCAACAACA AGGCGTAAAC GGTTATGACC ATCGTCGCTT CCTAAATCAA
TTCTACACCG GGCGCTTCGA TGGCACGTTT GCCACGGGCG TTGCCTTTGG CGAAAATCCC
AGCAACGGTG ACTGCCGTGT TTGCGGCTCT TTGGCTTCGC TTGCCGGGTT GGAGCAAGGC
CTACAAAAAA ATAACGATAC ACTGATTAAC CATGCTATCG CGAGAATACT ATTGGTTCAC
AGCATTATCT TAAGCATCGG TGGCATTCCG CTTATTTATT CTGGGGATGA GTTGGCCTTA
CTGAATGATT ACAGCTACGA ACAAGACGAA AGCAAAAAAC ACGATGAGCG TTGGGTGCAA
AGAATTGCCG TGACGGACGC GGACATTCAA GCCAGTAAGA AAAAAGACAC ACCGCAAAAC
CGGGTGACTA ATGGTTTGCA AAACCTCATA GCGTTGCGTA AACGCCACAA CGTATTTGGT
CAAGCCGCCA CGGGTATTAT CGATACTCAT CAAAGCGCAC TATTCGCCTA TCAACGCTCA
GCAAAAGATG GCACCAGATT GTTAGCTATT TGCAATTTCA GCGAGCATAA GCAACAAATA
TCAAGTACTA CTCTGGGTTT AGGTAGTGGT GATGTTTGGC ACGATTTGCT TTCTGAGGTA
CGGGTTTCTC CGGCCCCCCA AGAGCTTGAA CTTGCACCTT ATCAGGTGAT GTGGCTACTT
AATGCTCAAC CCGTTTAA
 
Protein sequence
MDIKLESKRT LTRILDGLDL SAMPKQDQAI FISRMNEQFP RLFSLLIDIY GHRYDFFYYL 
QQLTQTLANG FSKRSKAQKA KDQARLADPH WYQDEKMLGM ACYVDLFAGD LKGLKQKIPY
LVETGITYLH LMPLYDSPEG DSDGGYAVSD YRKVNKSLGT NNDLEALSIA LADAGISLVL
DFVFNHTSDE HKWAVAAKSG DEHFQDYYYM FDDKRIPDEY EQHLREIFPQ VRRGNFSWNS
DAHKWVWTTF NNFQWDLNYT NPAVFNAITD EMLYLANLGC EALRLDALAF IWKEMGTNCE
NQDKAHSLIQ AFNSCLQIAA PAVVFKSEAI VHPDEVLKYI DKQECQLSYN PLLMALIWNT
LATRDTHLLT ESMQKSFEIS PDCAWVNYVR CHDDIGWTFD DAVAQQQGVN GYDHRRFLNQ
FYTGRFDGTF ATGVAFGENP SNGDCRVCGS LASLAGLEQG LQKNNDTLIN HAIARILLVH
SIILSIGGIP LIYSGDELAL LNDYSYEQDE SKKHDERWVQ RIAVTDADIQ ASKKKDTPQN
RVTNGLQNLI ALRKRHNVFG QAATGIIDTH QSALFAYQRS AKDGTRLLAI CNFSEHKQQI
SSTTLGLGSG DVWHDLLSEV RVSPAPQELE LAPYQVMWLL NAQPV