Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3820 |
Symbol | |
ID | 4175600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4612317 |
End bp | 4614254 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638056848 |
Product | alpha amylase, catalytic region |
Protein accession | YP_663374 |
Protein GI | 109900119 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.166544 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATAA AACTTGAAAG TAAACGCACC TTAACGCGTA TTTTAGACGG CTTAGATTTA AGCGCTATGC CCAAACAAGA CCAAGCTATA TTTATCAGCC GAATGAATGA GCAGTTTCCT CGACTATTCT CGCTACTCAT TGATATTTAC GGTCACAGGT ATGATTTTTT CTACTACCTG CAACAGCTGA CACAAACCTT GGCCAACGGC TTTAGTAAGC GCTCGAAGGC GCAAAAGGCA AAAGATCAAG CTAGATTGGC CGATCCTCAT TGGTATCAAG ATGAAAAGAT GTTGGGTATG GCGTGTTATG TAGACTTGTT CGCGGGCGAC CTTAAAGGAC TCAAACAGAA GATCCCTTAC TTAGTTGAGA CCGGCATCAC GTATTTGCAT TTAATGCCTC TATACGATTC TCCCGAGGGA GATAGTGATG GTGGCTATGC CGTATCAGAT TATCGAAAGG TCAATAAGTC ACTTGGCACA AATAACGATC TTGAAGCATT ATCGATAGCA CTCGCTGATG CCGGCATCAG CCTCGTATTG GATTTTGTGT TTAATCACAC CTCGGATGAA CATAAATGGG CTGTCGCGGC CAAGTCAGGA GACGAACACT TCCAAGATTA CTATTATATG TTTGATGACA AACGTATTCC TGACGAGTAT GAGCAACATC TCAGAGAAAT ATTTCCTCAA GTTCGTCGAG GCAATTTCAG TTGGAATTCA GATGCCCATA AGTGGGTTTG GACGACATTC AACAATTTTC AATGGGATCT AAACTACACT AACCCCGCTG TATTTAATGC CATCACTGAC GAGATGCTCT ACCTAGCCAA TCTTGGTTGC GAAGCGCTGC GCTTAGATGC GTTAGCATTT ATCTGGAAAG AAATGGGTAC CAACTGTGAG AATCAAGATA AAGCGCACAG CTTGATCCAA GCATTCAACA GTTGTTTGCA AATCGCTGCT CCTGCAGTGG TCTTTAAGTC TGAAGCCATA GTACATCCTG ATGAAGTCTT GAAGTACATC GACAAACAAG AATGCCAGCT GTCTTACAAC CCCTTACTTA TGGCACTTAT CTGGAACACG CTAGCCACCA GAGACACGCA TTTATTGACT GAATCTATGC AGAAAAGCTT TGAAATATCC CCTGACTGCG CCTGGGTGAA TTATGTTCGT TGCCATGACG ATATTGGCTG GACATTTGAC GATGCAGTAG CCCAACAACA AGGCGTAAAC GGTTATGACC ATCGTCGCTT CCTAAATCAA TTCTACACCG GGCGCTTCGA TGGCACGTTT GCCACGGGCG TTGCCTTTGG CGAAAATCCC AGCAACGGTG ACTGCCGTGT TTGCGGCTCT TTGGCTTCGC TTGCCGGGTT GGAGCAAGGC CTACAAAAAA ATAACGATAC ACTGATTAAC CATGCTATCG CGAGAATACT ATTGGTTCAC AGCATTATCT TAAGCATCGG TGGCATTCCG CTTATTTATT CTGGGGATGA GTTGGCCTTA CTGAATGATT ACAGCTACGA ACAAGACGAA AGCAAAAAAC ACGATGAGCG TTGGGTGCAA AGAATTGCCG TGACGGACGC GGACATTCAA GCCAGTAAGA AAAAAGACAC ACCGCAAAAC CGGGTGACTA ATGGTTTGCA AAACCTCATA GCGTTGCGTA AACGCCACAA CGTATTTGGT CAAGCCGCCA CGGGTATTAT CGATACTCAT CAAAGCGCAC TATTCGCCTA TCAACGCTCA GCAAAAGATG GCACCAGATT GTTAGCTATT TGCAATTTCA GCGAGCATAA GCAACAAATA TCAAGTACTA CTCTGGGTTT AGGTAGTGGT GATGTTTGGC ACGATTTGCT TTCTGAGGTA CGGGTTTCTC CGGCCCCCCA AGAGCTTGAA CTTGCACCTT ATCAGGTGAT GTGGCTACTT AATGCTCAAC CCGTTTAA
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Protein sequence | MDIKLESKRT LTRILDGLDL SAMPKQDQAI FISRMNEQFP RLFSLLIDIY GHRYDFFYYL QQLTQTLANG FSKRSKAQKA KDQARLADPH WYQDEKMLGM ACYVDLFAGD LKGLKQKIPY LVETGITYLH LMPLYDSPEG DSDGGYAVSD YRKVNKSLGT NNDLEALSIA LADAGISLVL DFVFNHTSDE HKWAVAAKSG DEHFQDYYYM FDDKRIPDEY EQHLREIFPQ VRRGNFSWNS DAHKWVWTTF NNFQWDLNYT NPAVFNAITD EMLYLANLGC EALRLDALAF IWKEMGTNCE NQDKAHSLIQ AFNSCLQIAA PAVVFKSEAI VHPDEVLKYI DKQECQLSYN PLLMALIWNT LATRDTHLLT ESMQKSFEIS PDCAWVNYVR CHDDIGWTFD DAVAQQQGVN GYDHRRFLNQ FYTGRFDGTF ATGVAFGENP SNGDCRVCGS LASLAGLEQG LQKNNDTLIN HAIARILLVH SIILSIGGIP LIYSGDELAL LNDYSYEQDE SKKHDERWVQ RIAVTDADIQ ASKKKDTPQN RVTNGLQNLI ALRKRHNVFG QAATGIIDTH QSALFAYQRS AKDGTRLLAI CNFSEHKQQI SSTTLGLGSG DVWHDLLSEV RVSPAPQELE LAPYQVMWLL NAQPV
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