| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3803 |
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| Symbol | |
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| ID | 4175583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4586003 |
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| End bp | 4588426 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056831 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_663357 |
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| Protein GI | 109900102 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATTCCA AAAGCACACA CCACTGGCCA ATATCAACGG CTGTTGCCAC CATATTGACC
GCCGCTTCTA TTCCTACCTT AGCGAACGAA ACCAGTGCTT CGGATAATAA GGCTGCAGTG
ACAGTTAGCG ATGTGGAAAA GATCACTGTT TACGGTAAAC ATAACCAGTT GATAATGGAC
TCAGGCACAG CGACTAAATC GAATATGAGT TTGATGCAAA CACCTGCAGC AGTCGTAGTG
GTTGATAAGC TCTTAATCAA CGAGCAAGCG GGTACTACCT TGCAAGAAGC GCTGCGAAAT
GTCAGTGGTT TATCTCAAGA TGGTAATAAC TATGGGGTGG GCGATAACCT TGCCATTCGC
GGTTTAGGTG TTAATTATGC CTATGATGGA ATGTATGGTG GTGCAGATTT AGAAAACAGC
TACAACCCAA CGCGTACCAT GACCAATGTT GAAAGCATTG AGGTACTCAA AGGCCCTGCA
ACCGGTCTTT ACGGCATGGG CGCTGCCGGT GGCGTGATCA ACCTGATTGA GAAAAAGCCA
CAACAAAAAG AAGCCTATGA AATGCGCTTT GTCGTAGGTC AGTGGGACAA CTACGGTGTG
ATGTTTGACG CAACCGGAGG CTTAGCAAAA GATACGGCTT ACCGCTTAGT GGCAAATTAT
GAAACATCGG ATGGTTATCG CGGGTTAAGC TCAGAACGTA GCGAATTATA CGCGTCATTG
AGTCATGAAT TCTCTGCCGA TAACTCGGTG CTTTTTTCAG CGGCGTACAT CGATGATGCT
GTGCAGATTG ACTCGATTGG CCATCCTGTA CGTTTGATCG ATTTGAGTTT AATCGACTCC
GACCCGGGTA GCATTACCGC TGACGACCTA GCCAATGGCG ACGTTGCTGA CGGTGGCTTA
CAGCTAACGG AAGAGCAACG CCAGACTCTT GCTGATTCTC TTAGTGCAAC AGACGGCTGG
CAGCCAATTG ACCTTGGTGA CACAGGATTA ATTTCGCCAT TGTCGACTCC TAATGAGGGC
GAAGAGCTTA GGTTAAAGGT GCGTCAAGAT TTGGAGTTTG CTAACAATTG GCGTCTAACC
CATCAATTTC AATATAGGAA TTACACTACT GACTATATTC GTCAAACCTC TGCCTATAAC
TATATTTATC ACAACCGAAG CGGGGTGATT AATCTTGACC CGAGAGCGCC GTTGATCATT
GATGATGTGC TGTACCCGTT TGCTGCGCGC CGCCAAGAGT ACCGTAATAT CTCTGCTGAG
GAATCGACGT GGCAATATTT CGCTGATATA TCGAAAACTT GGAGTGCAGG CAGTTTACGT
GGTGAACACT TAATAAGCGC TAATTACGAA TATCGTGATA TGACGTATAC CCAATATTCA
ATTTGGGATG CAGACGATAC TCGCAGCGAT CCCGTACCGT ATATATTAGA TATACGTGAA
CCTAATTGGC CTACTGGTGA GTTTGATGAT TATAACCCGT CGCTTCGCAG CAAATATGAC
AAGTCAGCAA AAGCTTGGGG ATTGAGCCTA CAAGAGGTTT TATATATTAC AAACTCACTG
ACAGCGCGAG TAGGTGGCGC CTACAGTGGT ATCAAGCAGA CATACCAAAA CCAATTCAGT
GATGGCAATC CTGAATTTGA TGCCGACGAT AATGGTTTGA CCTACAATGT GGGGCTGAAC
TACAAGGTAA CTGAGCAATT TGCCGCTTTC GTGAATCAAT CTAAAGGTCG CACTGCTTAC
AGTGTGTTAG GTAGCTTGAC GGGAGATGAC GACCGTCCTG ACTCAGAATC TGAATCCTTT
GATTTAGGCA CAAGGTTTAC GGCCTTTGAT GAAGAACTAT TAGCATCCTT AGTCTGGTTT
AAAACCAGTA GAACTAACCT ACGTTATTCG AACCCGCTTT TCGAAGATGA TCCAGAAGAT
GCCTTTTATA ATATTGACGT ACCTGAATAT TATTATGACG AACGTGATGA AACACAAGGT
GTCGAGTTAG ACGTCAACCT AATGCTGAAT GACCAGTGGT CGATGAATTT TAACGCAACC
TATCAAGATG CAGTCACTAA CCCCGGCAGT CATGCATTAA GCCAAGTAGA AGAACAAACA
AAGGGGATTG CACAAAAATT TGCCAGTCTA TGGACAAGTT ACAGCCACCA GTTTGACGGT
CTTTCTTATC CAGTCAAATT CAGCATTGGG GTGAATTATG AAGATGAACG CTCAATTGCG
GCATCTGCAT TTGGTATTAA CTATGCGATT GTTGACGCCT ACGCCGTATT GGGTGGTGCA
GTAACTTACG TCGGCGAGAA GTGGAACATT CAGCTTAACC TAAACAATCT TACCGACGAA
ACTTACTACA GTAAGGCTCT GTACTTAGGT GGTTTACCAG GTGAAAGTCG CAACGCCAAA
TTAACCGCAT CATATCGTTT CTAA
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| Protein sequence | MYSKSTHHWP ISTAVATILT AASIPTLANE TSASDNKAAV TVSDVEKITV YGKHNQLIMD
SGTATKSNMS LMQTPAAVVV VDKLLINEQA GTTLQEALRN VSGLSQDGNN YGVGDNLAIR
GLGVNYAYDG MYGGADLENS YNPTRTMTNV ESIEVLKGPA TGLYGMGAAG GVINLIEKKP
QQKEAYEMRF VVGQWDNYGV MFDATGGLAK DTAYRLVANY ETSDGYRGLS SERSELYASL
SHEFSADNSV LFSAAYIDDA VQIDSIGHPV RLIDLSLIDS DPGSITADDL ANGDVADGGL
QLTEEQRQTL ADSLSATDGW QPIDLGDTGL ISPLSTPNEG EELRLKVRQD LEFANNWRLT
HQFQYRNYTT DYIRQTSAYN YIYHNRSGVI NLDPRAPLII DDVLYPFAAR RQEYRNISAE
ESTWQYFADI SKTWSAGSLR GEHLISANYE YRDMTYTQYS IWDADDTRSD PVPYILDIRE
PNWPTGEFDD YNPSLRSKYD KSAKAWGLSL QEVLYITNSL TARVGGAYSG IKQTYQNQFS
DGNPEFDADD NGLTYNVGLN YKVTEQFAAF VNQSKGRTAY SVLGSLTGDD DRPDSESESF
DLGTRFTAFD EELLASLVWF KTSRTNLRYS NPLFEDDPED AFYNIDVPEY YYDERDETQG
VELDVNLMLN DQWSMNFNAT YQDAVTNPGS HALSQVEEQT KGIAQKFASL WTSYSHQFDG
LSYPVKFSIG VNYEDERSIA ASAFGINYAI VDAYAVLGGA VTYVGEKWNI QLNLNNLTDE
TYYSKALYLG GLPGESRNAK LTASYRF
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