| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3800 |
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| Symbol | |
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| ID | 4175580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4582417 |
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| End bp | 4583631 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056828 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_663354 |
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| Protein GI | 109900099 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.582867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATACT TAACGTGTAT TGGGGGACTG TTATTAGCCT CTGTCTTGCT AAGTGGATGC
CAGCAAGAAA CAACTCAGCC TCAGGCTGGG CGTGTCACTG AAGTTGCTTA TCTCACCGTG
ACCCCTACCG AGTATAAAAT TGACACCCAA ATGCAAGGTA GAGTGGTAGC CTCGTTGACG
GCTGAAGTGC GTCCCCAGGT TGGTGGTATT ATGCAAGAGC GCCTATTTAC TGAAGGCGAG
TTCGTAGAAG AAGGTGACGT TCTATACCAA ATCGAGCCTG CGACCTTTCA AGCTGCCGTC
AATGAAGCTA AGGCAAATTT AAACAGTGCT AAAGCAACCG TTGCAACCGC CAAGCTCAAA
GATCAGCGTT TCGCTGACCT TTTGAAATTT GAAGGTGTGT CGCAACAAGA TGCAGACGAT
GCTCATGCAA CGTATTTAGA AGCAAAAGCA GATATTGAAC GTTTCGAAGC TGCTTTAGAA
ACAGCGCGCA TCAACCTTGA GTTTAGCAAA GTAAAAGCAC CCATCTCAGG ACGGATTGGT
ATTTCAAATG TTACCCCTGG ATCATTGGTC ACGGCATCAC AAACGACGGC CCTGTCGACA
ATTCGTACAT TAGACCCCAT TTATGTGGAC ATGATCAAAA GCAGCACAGA AATTTTGAAA
TTACGTCAAT TGTTAGCCAA AGCAGATATT AAAAAAGGCT CTACGGATGT TTCTCTGCTT
CTTGAAGATG GCAGTGAGTA CGAGCTAAAA GGCCAGCTGA AAATGCAAGA AGTAGCGGTT
GACGCTTCAA CAGGTGCCGT GACGCTAAGA GCTGAATTCC CTAACCCTGA CGGTGTGTTA
TTGCCAGGTA TGTTTGTGCG TACTCGCGTT AATGAAGCGG TTGACGACAA CGCTATTCTC
GTGCCCCAGC AAGGTGTTTA CCATAACCCT GCAGGTGAAG CTTATGCTTA CGTCATTGAC
GAGGACAACA AGGTACAGTC GCGCGTGGTG GAAACCATCA GTGCAGTGGG TAACAAATGG
TTTATCAGCT CAGGTTTGAA GGCGGGCGAC AAACTATTGG TAGAAGGCTC AAGCAAGGTT
GGCCCCGGCA GTGAAGTGAA AACGGTAGAA GTGCAAATGC AAAGTAACGG TAAGATGGTT
GCTGTTGCAG CTCAATCAGG AAATTCGTCC GCTGCGCCGT CTTCTGCACC TTCTGCTATA
AAAGGGGGCG TGTAA
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| Protein sequence | MKYLTCIGGL LLASVLLSGC QQETTQPQAG RVTEVAYLTV TPTEYKIDTQ MQGRVVASLT
AEVRPQVGGI MQERLFTEGE FVEEGDVLYQ IEPATFQAAV NEAKANLNSA KATVATAKLK
DQRFADLLKF EGVSQQDADD AHATYLEAKA DIERFEAALE TARINLEFSK VKAPISGRIG
ISNVTPGSLV TASQTTALST IRTLDPIYVD MIKSSTEILK LRQLLAKADI KKGSTDVSLL
LEDGSEYELK GQLKMQEVAV DASTGAVTLR AEFPNPDGVL LPGMFVRTRV NEAVDDNAIL
VPQQGVYHNP AGEAYAYVID EDNKVQSRVV ETISAVGNKW FISSGLKAGD KLLVEGSSKV
GPGSEVKTVE VQMQSNGKMV AVAAQSGNSS AAPSSAPSAI KGGV
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