| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3796 |
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| Symbol | |
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| ID | 4175576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4572390 |
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| End bp | 4575512 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056824 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_663350 |
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| Protein GI | 109900095 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGGAA AACACCACTG TCACTTTAAA TCCTTTGTTA AGCAGCCCCG CCAAACAAAG
ACATCATCAG GTTACGCAGC ACACTTTTTA AATAAAATAC TTCTTTTACT CATTGTTGTT
TTTTTGCCAG CAATCCTCAT CACTGCCAAC GGTCAAAACA GCCAGACCAC TAGCACGATG
ACATACAGCC AGTTAGGGGC GTCTTGGTAC AGTAAAGGCG AATATGACAA AGCGATAGAA
GCTTTTCGGC AAGCTCTTGA AGATGACATT AATCACTTTG GCGAAGCACA TCCTAATGTG
GCGACAGCAC ACAATAATTT AGCGCTCGCG TACAAAGCAA AAGGTCAATA CGACAAGGCA
ATCTCTTATT ATCAGTTGGC ACTTGCTAGC AGCATAGAAA ACTACGGTGA TGGGCATCAG
GAAATCGCTT CTGTGCGTAG CAATTTGGGA TTAGTTTGGT ATGCCAAGGG GCAATACGAT
AAAGCCCTCG AGTACTATGA ATTAGCGCTG GCCAGTAGCG TTAAAAACTT GCACAAGGAC
TCCGCTTTTA TTGCAACGTT AAGAAGCAAT ATCGGATTAG TATTTCAAGC CAAAGGCGCC
TACGACGAGG CTATTCGATA TTACACGCAG GCACTGGAAA ACGGCATTGC CACTTTGGGT
GACGACCACC CCTCGGTGGC AATTCGGCGC AGTAATCTAG GCAGTGCATG GGAAGCAAAA
GGACAGTATA AAAAAGCGGT AGCGCTTTAC GAATTAGCCT TAGAAAGTGG CATACGTCAA
CTGGGTGAAA ATCATCCTAC TGTGGCTACT AGACGCAATA AGCTGGGTAA TGTTTGGCAA
ATTCAAGGGC AGTACGGTAA AGCGATTGAA TACTACACGC TTGCCTTAAC AAGCAGTTTA
AATTCAGTTG GAAAAGACCA CCCTTTTGTA GCGGTGATGC TGAACAGTTT AGGTAGCGCT
TGGGAAGCCA AAGGTCAATA TACAAAAGCG ATCGAGCAAT ATGAAAAAGC GCTGCAAATC
AACAGACTAA TCTTTGGTGA AAGCCACCCT GACGTTGCTA GCACGCGCAG GCAATTGGGC
AGCGCGTGGC ATAAAAAGGG TCAATACGAC AAATCGTTGT TGTATTACAA ACAAGCGTTG
GCGAGTGACA TTAAGACGTT CGGAGGTGAC CATCCCAGTG TTGCGGACAC GCGCAAGCGT
TTGGGCAGTC TTTTACAAGC CAGAGGTCAG TTTGATGAAG CAACAAAACT GTATGAGCTC
GCGCTTACCA GTAGTTTGGC GATTTTTAGC ACCAGCCATC CAGAAGTTGC CAGTATTTAT
CGTCAACTAG GGAGCGTATG GCAAGCCAAA GGCCAATACA CGAAGTCGCA AAATTACTAT
GAGCAAGCGT TAGAAAGCGA GATAAATACA TTTGGTGAAG ATCACCCAAA TGTGGCGTTA
ACCCATGCAC TACTTGGCAG CCTATGGGAG GCAAAGGGGC AATATGACAA GGCAATCGGC
TTTTATGATT TAGCCTATCA GAGCCATCTG CTCAAATTTG GTGAGAGTCA CCCAAGCGTG
GCCAAAACTC GGCGTCAGCT CGGCCGGGTT TGGCAGGAGA AAGGGCAATA CGACAAAGCC
TTAGGGTTTT TCGAGTTGGC GTTAACCAGT GATATAAAAA CCTTTGGTGA CGGGCACCCA
GATGTGGCCG TTACACATCG CCTGTTAGGC GGTCTTTGGC AAGCTAAAGG TCGATACGAT
AAGGCTATCA AGTACTATCA ACTTGCTCTT AGCAGTAGCT TGTTAACTTT TACTGAGAGT
CATCCCGAAG TGGCTGATAC GCGCAGGCAG CTTGGCAGTG TGTGGCAGGA GAAAGGTCAG
TACGACAAAG CAATGGCGTT TTATGCCTCG GCGCTTGCCA GTGATACAAA AACCTTTGGG
GATAACCACC CTAACGTCGC CGTCACGCGC AGGCTTTTAG GAAGCCTGTG GCAAATTCAA
GGTGATTACG ACAAGGCAAT TGAATATTAC GAATTGGCCC TGCAACACAC GCTTAAAAAA
TACGGCAACG CACACCCAGA AGTCACTAAA ACATATAATC AATTGGGCAG TGCATGGCAA
GCGCAAGGGC AGTTTGATAA GGCCAATGAA TACTATCAAC TGGCCTTAAT GGGGGGGCAG
CAATCTCTCG GTGAACAGCA TCCTGTAGTG GCTACAACGC AAAGCCATAT GGGCAGTCTC
TGGCTGGCTA AGGGCCAGTA CGACAAAGCC TTAGGCTTAT ATGAGCTGGC CTTAGCTAGC
ACGATTAAAA GCTTGGGGGA AGAGCACCCA GATGTTGCCG AGATACGCAG TAGTTTGGGC
AGAATATTCA AGGGAAAAGG CCAATACGAC CGAGCAATAG AATATTACGA ATTGGCCCTT
CGCAGCGGCA TTGCAACCTT CAAAGAAGAC CATCCGTCGG TAGCTATAAG GTGGAGTAAT
TTAGGCAGTT TGTGGTCAGC GAAGGGACAA CATGAAAAGG CGATTAAATA CTATCAATTG
GCACTTAACA GTGGGATCAA CACCTTTGGT CAAGACCACC CTGCGGTGGC CATCAGACAA
AGTAATCTAG GCAGTGCTTG GGAATCGTTG GGAGACTACG ACAAAGCGAT ACAATATTAT
GAGTTAGCAC TACAAGGGGG GATTAAACAC TTTGGTGAAG ATCACCCAGC AGTGGCCAAA
AGGCGCAGTA ATCTAGGGAG CGTTTTTAAA GCACTTAAGC AATATGACAA AGCGATTAGT
TACTATGAAT TAGCACTGAA AAGCGGGATC CGCGTGTTGG GGGAAAACCA TCCGTCAGTC
GCGATCCGCC AGAACAGTTT AGCCAGTTGC TGGCAAGCAA AAGGGCAGCA CGACAAAGCT
ATCGCGTATT ATGAGAAGGC GCTGTCGATC TACGTGCAAA CCCTCGGCGA AAATCATCCG
AATGTGGCCG CGACGCGAAG CAACCTTGGT AGCGCATGGT ACGCGAAAGC AGAGTTTAAA
AAGGCGATTG AATATTATGA ATTGGCGTTA GCCACGGGAC TAGCAATTTA CAACAAAGAC
CACCCATTCG TTAGTGCCAT GCGCAGTAAT ATAGACAATG CTAGGGATGC TCGTTGGCAA
TAA
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| Protein sequence | MNGKHHCHFK SFVKQPRQTK TSSGYAAHFL NKILLLLIVV FLPAILITAN GQNSQTTSTM
TYSQLGASWY SKGEYDKAIE AFRQALEDDI NHFGEAHPNV ATAHNNLALA YKAKGQYDKA
ISYYQLALAS SIENYGDGHQ EIASVRSNLG LVWYAKGQYD KALEYYELAL ASSVKNLHKD
SAFIATLRSN IGLVFQAKGA YDEAIRYYTQ ALENGIATLG DDHPSVAIRR SNLGSAWEAK
GQYKKAVALY ELALESGIRQ LGENHPTVAT RRNKLGNVWQ IQGQYGKAIE YYTLALTSSL
NSVGKDHPFV AVMLNSLGSA WEAKGQYTKA IEQYEKALQI NRLIFGESHP DVASTRRQLG
SAWHKKGQYD KSLLYYKQAL ASDIKTFGGD HPSVADTRKR LGSLLQARGQ FDEATKLYEL
ALTSSLAIFS TSHPEVASIY RQLGSVWQAK GQYTKSQNYY EQALESEINT FGEDHPNVAL
THALLGSLWE AKGQYDKAIG FYDLAYQSHL LKFGESHPSV AKTRRQLGRV WQEKGQYDKA
LGFFELALTS DIKTFGDGHP DVAVTHRLLG GLWQAKGRYD KAIKYYQLAL SSSLLTFTES
HPEVADTRRQ LGSVWQEKGQ YDKAMAFYAS ALASDTKTFG DNHPNVAVTR RLLGSLWQIQ
GDYDKAIEYY ELALQHTLKK YGNAHPEVTK TYNQLGSAWQ AQGQFDKANE YYQLALMGGQ
QSLGEQHPVV ATTQSHMGSL WLAKGQYDKA LGLYELALAS TIKSLGEEHP DVAEIRSSLG
RIFKGKGQYD RAIEYYELAL RSGIATFKED HPSVAIRWSN LGSLWSAKGQ HEKAIKYYQL
ALNSGINTFG QDHPAVAIRQ SNLGSAWESL GDYDKAIQYY ELALQGGIKH FGEDHPAVAK
RRSNLGSVFK ALKQYDKAIS YYELALKSGI RVLGENHPSV AIRQNSLASC WQAKGQHDKA
IAYYEKALSI YVQTLGENHP NVAATRSNLG SAWYAKAEFK KAIEYYELAL ATGLAIYNKD
HPFVSAMRSN IDNARDARWQ
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